Protein Info for GFF2341 in Sphingobium sp. HT1-2

Annotation: competence lipoprotein ComL, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR03302: outer membrane assembly lipoprotein YfiO" amino acids 17 to 252 (236 residues), 286 bits, see alignment E=1.1e-89 PF13525: YfiO" amino acids 45 to 239 (195 residues), 176.9 bits, see alignment E=8.9e-56 PF13512: TPR_18" amino acids 47 to 169 (123 residues), 55.4 bits, see alignment E=1.7e-18 PF13174: TPR_6" amino acids 121 to 161 (41 residues), 26.9 bits, see alignment 1e-09

Best Hits

Swiss-Prot: 50% identical to BAMD_CAUVC: Outer membrane protein assembly factor BamD (bamD) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K05807, putative lipoprotein (inferred from 90% identity to sch:Sphch_1245)

Predicted SEED Role

"competence lipoprotein ComL, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>GFF2341 competence lipoprotein ComL, putative (Sphingobium sp. HT1-2)
MTRRMLTKTLTRIGAATTLVLIASPVLTGCSTSKNKADTLYVARDVSTLYNSGKARLDRG
QYKLAAALFDEVERQHPYSPWARRAQLMSAFSYYMNRDYPESIAASQRFLSIHTGNKDAP
YAYYLIALCYYEQIADVTRDQKITQQAMDALGELIRRYPDTRYAADARLKVDLVNDHLAG
KEMELGRFYQRRGQWLAATLRFRTVIDKFQTTTHTPEALERLVESYLSLGIPAEAQKAAA
VLGRNYPGTKWYERSYKLMQQHPVKS