Protein Info for GFF2331 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 PF13401: AAA_22" amino acids 27 to 133 (107 residues), 32.3 bits, see alignment E=2.9e-11 PF07728: AAA_5" amino acids 28 to 172 (145 residues), 49.9 bits, see alignment E=8.9e-17 PF00004: AAA" amino acids 29 to 177 (149 residues), 51.1 bits, see alignment E=5e-17 PF07724: AAA_2" amino acids 30 to 165 (136 residues), 41.5 bits, see alignment E=3.9e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfo:Pfl01_1409)

Predicted SEED Role

"ATPase associated with various cellular activities, AAA_5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (281 amino acids)

>GFF2331 hypothetical protein (Pseudomonas sp. DMC3)
MKFEGTQAYVATDDLKLAVNAAITLERPLLVKGEPGTGKTMLAEQLAESFGAKLITWHIK
STTKAHQGLYEYDAVSRLRDSQLGNEKVHDVRNYLKKGKLWEAFESEERVILLIDEIDKA
DIEFPNDLLQELDKMEFYVYEIDETIKAKKRPIIIITSNNEKELPDAFLRRCFFHYIAFP
DRTTLQKIVDVHYPDIKKDLVSEALDVFFDVRKVPGLKKKPSTSELVDWLKLLMADNIGE
AVLRERDPTKAIPPLAGALVKNEQDVQLLERLAFMSRRGTR