Protein Info for PS417_11795 in Pseudomonas simiae WCS417

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 PF01266: DAO" amino acids 32 to 385 (354 residues), 234.3 bits, see alignment E=6.1e-73 PF13450: NAD_binding_8" amino acids 35 to 74 (40 residues), 22.4 bits, see alignment 2.4e-08

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU2565)

Predicted SEED Role

"Gamma-glutamyl-putrescine oxidase (EC1.4.3.-)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U105 at UniProt or InterPro

Protein Sequence (430 amino acids)

>PS417_11795 FAD-dependent oxidoreductase (Pseudomonas simiae WCS417)
MIQSTDHARSYYRATANALTERPALGTDLTADVCVIGGGFTGVNTAIELAQRGLSVVLLE
ARRIGWGASGRNGGQLIRGIGHDVSGFGKYVGEEGVRYLERAGIDSVALVGERIRTHRID
CDLRWGFCELANTPAQFAAFKGEQAHLAALGYAHETRLVGPQDIQQVVGSPVYAGGLVDM
GSGHLHPLNLVLGEARLAESLGVRIFEHTEVLELIHGDTVHVRCAGGTVRAASLVLACNA
HLEELEPRLSGKVLPAGSYIIATEPLSADLANQLIPQNLALCDQKVGLDYYRLSADRRLL
FGGACHYSGRDPADIAAYMQPKMLKVFPQLANTAIEFQWGGKIGITANRFPQVGRLKQYP
NVFYAQGYSGHGLNVTHWCARLLAEAIQAGHSTGLDIFSQVPHMTFPGGKALRSPLLALG
MLWYRLRELI