Protein Info for PS417_00120 in Pseudomonas simiae WCS417

Annotation: coproporphyrinogen III oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

Swiss-Prot: 98% identical to HEM6_PSEFS: Oxygen-dependent coproporphyrinogen-III oxidase (hemF) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K00228, coproporphyrinogen III oxidase [EC: 1.3.3.3] (inferred from 98% identity to pfs:PFLU0023)

MetaCyc: 69% identical to coproporphyrinogen III oxidase (Escherichia coli K-12 substr. MG1655)
Coproporphyrinogen oxidase. [EC: 1.3.3.3]

Predicted SEED Role

"Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3)" in subsystem Experimental tye or Heme and Siroheme Biosynthesis (EC 1.3.3.3)

MetaCyc Pathways

superpathway of heme b biosynthesis from glutamate (9/10 steps found)
superpathway of heme b biosynthesis from glycine (6/8 steps found)
heme b biosynthesis I (aerobic) (3/4 steps found)
heme b biosynthesis V (aerobic) (3/4 steps found)
superpathway of heme b biosynthesis from uroporphyrinogen-III (4/6 steps found)
3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) (3/9 steps found)
3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent) (3/9 steps found)

KEGG Metabolic Maps

Porphyrin and chlorophyll metabolism

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.3.3.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TTX4 at UniProt or InterPro

Protein Sequence (310 amino acids)

>PS417_00120 coproporphyrinogen III oxidase (Pseudomonas simiae WCS417)
MTTRTEAVKAYLLDLQDRICSALETFETDTRFIEDAWTRPAGGGGRTRVIENGSVIEKGG
VNFSHVFGSGLPPSASAHRPELAGRGFEALGVSLVIHPHNPHVPTSHANVRFFIAEKEGE
EPVWWFGGGFDLTPYYGNEDDCIHWHRVAEQACAPFGPDVYSRYKAWCDTYFHIKHRNEP
RGIGGLFFDDLNEWDFDTCFAFIRAIGDAYIDAYLPIVQRRKSTAYTEQQREFQEFRRGR
YVEFNLVYDRGTLFGLQSGGRTESILMSLPPQVRWSYDWKAEAGSEEARLTDYFLQDRDW
LGLAAPKAAV