Protein Info for PS417_11695 in Pseudomonas simiae WCS417

Annotation: peptide synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 3949 PF00668: Condensation" amino acids 48 to 489 (442 residues), 358 bits, see alignment E=1.9e-110 amino acids 1112 to 1552 (441 residues), 378.7 bits, see alignment E=9.9e-117 amino acids 2171 to 2604 (434 residues), 243.1 bits, see alignment E=1.3e-75 amino acids 2634 to 3069 (436 residues), 286.1 bits, see alignment E=1.2e-88 PF00501: AMP-binding" amino acids 509 to 866 (358 residues), 256.3 bits, see alignment E=1.1e-79 amino acids 1574 to 1923 (350 residues), 260.8 bits, see alignment E=4.7e-81 amino acids 3092 to 3440 (349 residues), 299.6 bits, see alignment E=7.8e-93 TIGR01733: amino acid adenylation domain" amino acids 530 to 938 (409 residues), 418.4 bits, see alignment E=7.3e-129 amino acids 1593 to 1997 (405 residues), 406.1 bits, see alignment E=3.9e-125 amino acids 3112 to 3513 (402 residues), 456.4 bits, see alignment E=2e-140 PF13193: AMP-binding_C" amino acids 924 to 999 (76 residues), 36.3 bits, see alignment (E = 2.3e-12) amino acids 1981 to 2063 (83 residues), 39 bits, see alignment (E = 3.3e-13) amino acids 3497 to 3568 (72 residues), 34.4 bits, see alignment (E = 8.8e-12) PF00550: PP-binding" amino acids 1026 to 1090 (65 residues), 55.2 bits, see alignment (E = 1.7e-18) amino acids 2090 to 2151 (62 residues), 56.3 bits, see alignment (E = 7.7e-19) amino acids 3594 to 3657 (64 residues), 47.3 bits, see alignment (E = 5e-16) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 2472 to 2626 (155 residues), 158.7 bits, see alignment (E = 2.6e-50) PF00975: Thioesterase" amino acids 3678 to 3795 (118 residues), 95.6 bits, see alignment (E = 1.3e-30)

Best Hits

Predicted SEED Role

"Pyoverdine sidechain non-ribosomal peptide synthetase PvdD" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U0Y9 at UniProt or InterPro

Protein Sequence (3949 amino acids)

>PS417_11695 peptide synthase (Pseudomonas simiae WCS417)
MLSNPNIDLVSRFLRLPLEQRQQFYQRLQSRGMSFAQLPIASIREDGQMLPLSYAQERQW
FLWQLDPDSATYHIPGALRLQGRLDLAALQRAFDSLLARHESLRTRLVQDGERLLQNVAP
EARIEIRQDVADEQQLLARVEAEIARPFDLQAGPLLRVSLLQLAEDEHVLVMVQHHIISD
GWSMQVMVEELVQFYAAHSQGREVQLPGLPIHYADYALWQRSWMEAGEKARQLAYWQDLL
GGEQPVLELPLDHPRPAQQSHCGASLQVHLPADLVAGIKRLAQQEGVTPFMLLLASFQTL
LFRYSGQSDIRIGVPNANRNRVETERLIGFFVNTQVLKADLDGQMSFAELLQQAKRRSLE
AQAHQDLPFEQLVVALQPERSLSHNPLFQVMFNHQTDAQGGRDGQQLPGLRVAQLDWENQ
TTHFDLSLDTHESAEGLWAALTYATDLFESATIERLAQHWQNLLQAAVSAPRSRLCVLSM
LDAPEQQRMLKDWNAPATVAAPHAVHQLFEAQAREHPARQALALDDQTLSYGELNRQANR
LAHYLIAQGVGPEVLVGIAVERSFAMVVSLLAVLKAGGAYVPLDPEYPRERLVHMLDDSG
VRLVLTQSHLRDRLPLPADLTALDIDLADAQLAQCAEHNPPTAFEPRSLAYVIYTSGSTG
KPKGVAISHAALSEFAGIAAEYSRLVADDRVLQFATLNFDGFVEQLYPALTLGATVVLRG
PQLWDGADLYRQIIDQGITLADLPTAYWKLFLQDCLAAGPRPYGALRQVHIGGEAMPLDG
PVLWRRAGLGHVRLLNTYGPTEATVVSSVLDCSDDNAVMGATASPIGRALPGRGLYVLDP
DLNLLPVGAVGELYIASAGGLARDYLQRPSLTAERFVADPFSTLGERLYRTGDLARYRAD
GVIEYVGRVDHQVKIRGFRIELGEIEALLLAQEAVREAFLLAADNQLVAYLVPAQPLSAA
EQAAAGETLKATLREQLPDYMVPAHLIFLDRMPLNPNGKLDRQALPKPDGSAVQQAWQAP
VTPRQQQVAAIWADILGVERVGLTHHFFELGGHSLLAMQVVSRIRQALKLEVPLKLLFEQ
PRLEGFVAALATQDPDAPTAPALLPVGRDQPLPLSYAQERQWFLWQLEPQSAAYHIPSAL
RLKGQLDLGALQRSFDTLLARHESLRTHLRQERDRTVQIISPQVSLQIAHAEVHEAQLKA
RVEAEIAQPFNLEQGPLLRVSLLRIAADEHVLVLVQHHIVSDGWSMQLMVEELVQLYAAY
SQGQVLQWPALPIQYADYAVWQRNWMEAGEKARQLAYWRDMLGGEQSVLALPFDHPRPAV
QSHRGARLAFELPGALTQGLKALAKQQDVTLFMLLLASFQTLLHRYSGQEEIRVGVPIAN
RNRSETERLIGFFVNTQVLKADLHGQMSVEQLLQQARQRALDAQAHQDLPFEQLVEALQP
ERSLSHNPLFQVMFNHQTDVGQAQVQQQLPNLSVEGLEWESKTAHFDLDLDIQESTEGIW
ATLGYAQDLFEASTVQRMARHWQNLLQGMVADPRQTLSQLNLLDNTERQQILQRWDQSDA
GFSAKRLVHELVADRAGETPEAVAVKFGEQQLTYGELDRQANRLAHALIARGVGPEVRVA
IAMPRSAEIMVAFLAVMKAGGVYVPLDIEYPRDRLLYMMQDSRARLLLTHSTVQQRLPIP
DGLEALAVDQTQAWSANDDSAPEVVLDGDNLAYVIYTSGSTGMPKGVAVSHGPLVAHIIA
TGERYETSPADCELHFMSFAFDGSHEGWMHPLINGASVLIRDDSLWLPEYTYQQMHRHHV
TMAVFPPVYLQQLAEHAERDGNPPKVRVYCFGGDAVAQASYDLAWRALKPTYLFNGYGPT
ETVVTPLLWKARKGDPCGAVYAPIGTLLGNRSGYVLDAQLNLQPIGVAGELYLGGEGVAR
GYLERPALTAERFVPDPFGKPGSRVYRSGDLTRGRPDGGVDYLGRVDHQVKIRGFRIELG
EIEARLREQDSVGETVVVAQEGPSGKQLVAYVVPLDPLLIDDAVAQSTCREALRRALKAR
LPDYMVPTHLMFLERMPLTPNGKLDRKGLPRPDVSQMQQVYVAPQSELEQKIAAIWSDVL
RLPRVGLHDNFFELGGDSIISIQVVSRARQAGVRFTPKDLFQHQTVQSLAAVAREGEGAV
VLDQSALTGDLLLLPVQQAFFADDIPRRHHWNQSVVLQPHQALQAPLLVAALQALIVHHD
ALRIGFVQGAAGWSAAYRGPQQHQAEQVLWQTTLNAVEELEALGEEAQRSLDLSEGPLLR
AVLVDLADGSQRLLLVIHHLVVDGVSWRILLEDLQTAYRQVAQGAKVVLPAKTSAIRAWA
ERLQAYARSAALAQELAWWQTQLQGSPTGLPGADPQASLSNRHALSVTTHLDQVFTRRLL
QDAPSAYRTQINDLLLTALARVVVRWTGDASMLIRLEGHGREDLFDEIDLTRTVGWFTSL
YPVKLVPTDSLAGSLKQIKEQLRAIPDKGLGFGALRYLGNAEAQQALSELPRPRITFNYL
GQFDGSFDGGEQEGLFVPSGDGSGAEQSGEAPLGNWLEINGQVYAGELKLNWSFSQQMFD
EATVQRLADDYAAELKALIEHCGVNQGVTPSDFPLARLSQAQLDSLPVTVADIEDVYPLS
PMQQGMLFQSLYGEGSGDYINQMRIDVEGLDVPRFRQAWQAAVDSHEILRSGFLWQTEFE
QPLQVVYKQMRMPFAELDWQGRPDSSAALDSLAESARAQGFVLEQAPLLSLTVVRTGASR
YHLIYTNHHILMDGWSGSQLFGEVLQHYAGEPLRAPIGRYRDYIAWLQAQDKSVSEAFWK
AQLLNLQEPTRLARGLQAAQSEALAVNGEHRLNLDASQTAQLKAFAQRHKVTLNTLVQSA
WLLLLQHHTGQATVAFGATVAGRPAQLRGIEQQVGLFINTLPVVATPDAQMTVSQWLQQI
QAQNVRLREQEHTPLFEIQRWAGLGGEALFDSILVFENYPVSEALEQGAPSGLTFGAVHS
LEQTHYPLTVLLGIGDTLGMEFNYDRHAFSAAHIEQLAEHFQQLLQALAVDGAQRLATLP
SLASTERETVLHAWNATAADYPLHLAVHQLIEAQVVRTPDAPALVFAGQVLSYAALNRRA
NRLAHRLIAAGVGPDVLVGLAVERSIEMVVGLLAVLKAGGAYVPLDPEYPRDRLAYMLQD
SDVKLLLTQAHLLEQLPIPTGLHSLVLEQGDEWLQAYAEQNPLVTVDGENLAYVIYTSGS
TGQPKGAGNRHSALTNRLCWMQHAYGLEGSDTVLQKTPFSFDVSVWEFFWPLMTGARLVV
AAPGDHRDPARLVSLINAEHVTTLHFVPSMLQAFLQDAGVGACHSLQRIVCSGEALPVDA
QQQVFAKLPHAGLYNLYGPTEAAIDVTHWTCVDEGRDAVPIGRPIANLGCYVLDGNLEPA
PVGVLGELYLGGVGLARGYHRRPALTAERFVTDPFGSGSRLYRTGDLARYRDDGVIEYAG
RIDHQVKLRGLRIELGEIEARLLEHACVREAAVLAVDGTHLVGYLVLQAPSEDWKAQVAM
HLAAQLPDYMVPAQWVVLTQMPLSPNGKLDRKALPKPEAQGAGAYQAPQSAIEQQVAAIW
RDVLGVERVGLNDNFFELGGHSLLVLMLKERIRKVSGVGLSVSQLMLNPTVRGQVNCLQG
DARSSLIVKLNSQTEGTPLFMFHPSFGSVHCYTAIALALREQRPVFGVICRALAEAGAEV
PEWQAMVEDYAEQLLLAQPQGAFRLAGWSLGGNLAMEVAYVLEQAGRDVEFVGWIDSAPP
QWLTPYWQAVVTEDDREISANERRAALLGVMFPAFAERIQAAWQQCQRDAQDEAGQWQGF
IAWAEQTLGEAFTGIKDELLRGNEAQISWEVDRALSERLSAADFKPIKAPVSCWWASMSR
AGQFKDLIEQHMASTLVQGRIERSVVIETDHDGIIDSAEFIRSLVAAME