Protein Info for PS417_11690 in Pseudomonas simiae WCS417

Annotation: peptide synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4679 transmembrane" amino acids 4135 to 4149 (15 residues), see Phobius details PF00668: Condensation" amino acids 47 to 496 (450 residues), 391.3 bits, see alignment E=1.1e-120 amino acids 1094 to 1517 (424 residues), 253.2 bits, see alignment E=9.3e-79 amino acids 1545 to 1970 (426 residues), 269.7 bits, see alignment E=9.2e-84 amino acids 2590 to 3022 (433 residues), 362.3 bits, see alignment E=7.4e-112 amino acids 3617 to 4056 (440 residues), 365.2 bits, see alignment E=9.6e-113 PF00501: AMP-binding" amino acids 518 to 865 (348 residues), 305.5 bits, see alignment 9.6e-95 amino acids 1992 to 2346 (355 residues), 254.1 bits, see alignment 4.2e-79 amino acids 3043 to 3382 (340 residues), 291.6 bits, see alignment 1.7e-90 amino acids 4079 to 4428 (350 residues), 259.2 bits, see alignment 1.2e-80 TIGR01733: amino acid adenylation domain" amino acids 538 to 938 (401 residues), 451.3 bits, see alignment E=1e-138 amino acids 2012 to 2421 (410 residues), 403.7 bits, see alignment E=2.8e-124 amino acids 3064 to 3456 (393 residues), 432.1 bits, see alignment E=6.9e-133 amino acids 4098 to 4502 (405 residues), 386.6 bits, see alignment E=4.5e-119 PF13193: AMP-binding_C" amino acids 922 to 990 (69 residues), 38.3 bits, see alignment (E = 4.2e-13) amino acids 2405 to 2479 (75 residues), 45.1 bits, see alignment (E = 3.2e-15) amino acids 3440 to 3508 (69 residues), 34.4 bits, see alignment (E = 6.8e-12) amino acids 4486 to 4564 (79 residues), 42.7 bits, see alignment (E = 1.8e-14) PF00550: PP-binding" amino acids 1017 to 1076 (60 residues), 57.5 bits, see alignment (E = 2.6e-19) amino acids 2507 to 2569 (63 residues), 48.1 bits, see alignment (E = 2.3e-16) amino acids 3535 to 3599 (65 residues), 52.5 bits, see alignment (E = 9.9e-18) amino acids 4591 to 4653 (63 residues), 52.4 bits, see alignment (E = 1e-17) TIGR01720: non-ribosomal peptide synthase domain TIGR01720" amino acids 1382 to 1536 (155 residues), 159.6 bits, see alignment (E = 1.9e-50)

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U5P2 at UniProt or InterPro

Protein Sequence (4679 amino acids)

>PS417_11690 peptide synthase (Pseudomonas simiae WCS417)
MNAEDSLKLARRFIGLPLEKRQVFLQALQKEGVDFSRFPIPAGVQVEDRQALSYAQQRMW
FLWQLDPASGAYNLPGAVRLKGALSLDALEQAFASLVARHETLRTVFQRQADERLLQVAA
DTSLTVEQLDLSHLALAEREEAVNAAATRQSLLPFDLENGPLLRVQLLKLDAQEHVLLLT
LHHIVSDGWSMNVLIDEFIRCYDAHERSQAPQLPALPIQYSDYALWQRRWLEAGEQARQL
EYWQARLGDEHPVLELPTDRPRPAMPSYQGTRHDFAINPQLAAQLRTCAQKHNVTLFMLL
LGAFNVLLHRYTGQGDIRVGVPIANRNRTEVEGLIGFFVNTQVLRTELTGQTLVTELLQS
IKEHALGAQAHQELPFERLVEALKVERSLSHTPLFQVMYNHQPVVADIANVSTASGLELA
LVEWQGRTTQFDLTLDTYEKSGTLHAALTYANDLFDALTIERMAGHWIRLLQAMVADGTQ
RIGELPMLAADEQQLLVHAWNQTAEAYPTERGIHHLVEDQVQATPDAPALVFGTTTLTYA
QLDARANQLAHALREKGVAPDVLVGICIERSIEMVVGLLAILKAGGAYVPLDPEYPQERL
AYMIEDSGIQLLLSQHSLLPVLPVEGIQVIALDQPASWLDGYSAESANVSLHALNLAYVI
YTSGSTGKPKGAGNSHRALVNRLCWMQQAYGLDARDAVLQKTPFSFDVSVWEFFWPLMTG
ARLVVAAPGEHREPARLIETIGRHGITTLHFVPSMLQAFIHEPGVQACTSLQRIVCSGEA
LPLDAQLQVFAKLPQAGLFNLYGPTEAAIDVTHWTCVDEGADSVPIGRPIANLGTYVLDA
QLNPVPAGVSGELYLGGIGLARSYHRRPALTAERFVPSPFGDGARLYRTGDRVRQRADGV
IEYLGRLDHQVKLRGLRIELGEIETRLMQHPSVREAVVLVQGGKQLVAYLVLEDTAPVDL
KAWLLSSLPEYMVPSHMVPLAKLPVTANGKLDRKALPLPDVAPQQAFVAPENDLQKAVAA
IWSDVLGVEQVGLDDNFFELGGDSIISIQVVSRARQAGIRLSPRDLFQYQSVRSLALVAT
FEQATAIDQGPVTGEVILTPVQHSFFEQAIPARQHWNQSLLLTPREALEPARLEAALTRL
INHHDALRLRFLQQADGWRQAHAEPVATASLWQSQVADEAELAALCDEAQRSLDLEQGPL
LRAVLAVMADGTQRLLLVVHHLAVDGVSWRILLEDLQQAYRNAALPAKTSAYQLWAQQLQ
RHAQTLDEQLPYWQAQTASADLPCDNPQGGLQNRLGSLLEIRLSAEHTRQLLQDAPAAYR
TQVNDLLLTALARVISRWSEQPAALIQLEGHGREDLFDSVDLSRTVGWFTSLFPVRLHAD
GELSAAIKSVKEQLRAVPHKGIGYGLLRYLGTPDAREALSALAAPRITFNYLGQFDRQFN
ESALFVPATQGSGQAQDPQAPLANWLTVEGQVYGGELALQWGFSREMFDVATVQRLADDY
RAELQALIEHCCATPAGQVTPSDFPLARLTQQQLDGLPIAGPAIADLYPLSPMQQGMLFH
TLYEPEAEAYINQLRLDIEGLDLLAFGRAWQAALDRHDILRSSFHWLGLDSAHQVIQRQV
DVQLHVIEDIDADCDALAVAEREKGFTLNAAPLFRLMLVRGAGTAWHLIFTSHHILMDGW
SNAQLLGEVIAHYAGHAVPAPLGQFRDYLGWLHQQASGEAFWKATLAPLQTPTLLAQALR
VPTEGKGMAEHRVLLGDDFTRALGEFARRHKVTLNTVLQGAWSLLLQRYTGQDCVAFGAT
VAGRSAPLPGIEQQLGLFINTLPIVSAASPALSVAGWLSELQALNLSLRDHEHVPLYDIQ
GWAGQQGAALFDTLLVFENFPVAEALKQGAPAGLTFGRLHNHEQTHYPLTLGIELGASLR
LEFGYDQARFSAQQVARLSGNLHHLLVQMLADAQAPLGNLRLLDAATHRDVLAHSRATGA
APRQLRVHERIAAQAAATPDALAVQAGDARLSYAQLNDHANRLAHRLLALGVGPGQRVGL
AARRGPQLIVSLLAVLKSGAAYVPLDPNYPTERLAYMLADSRLDLLLSETGLLADLPLPQ
GLARLDFTASGAELADYPSTPPANHAAAADLAYVIYTSGSTGLPKGVAIDHAALSQFCDS
AEAYSRLSASDRVLQFATFSFDGFVEQCYPPLCVGAALIMRGDELWDAGQLAREIVEQGV
TLADLPAAYWYLLAKECAVDRRTLGNLRQVHVGGEAMSVEGLRAWHTAGLGGVRLVNTYG
PTEATVVSSVHDCQLADASDAFGVPIGRAIEGRALYVLDSGFELLASDGVGELCIGAEHG
LAQCYFDRPALTAERFLPDPFSAVPGARLYRSGDLARYNEAGALEYVGRIDHQVKIRGFR
VEMGEIEASLQALPSLREAAVIAQPSATGTQLVAYVVPVTAQTLDPQALAATLRQSLPDY
MVPGQWVILEALPLNNNGKLDRRALPAPDLNQARQAYLAPQNPLQSRLAAIWQAVLQVEQ
VGLNDHFFERGGHSLLATQVVSRVRHDLKLEVPLRALFEQPTLEAFAAACAGLQTAPALP
LVAVTRDQPLALSFAQERQWFLWQLDPTSAAYHVPSALHLRGRLDVAALEQAFQVLVQRH
EPLRTTFVEEGEHTWQVIHPRLAMPIERQRVVASAIEHAVAQEIQRPFDLVNGPLMRVNL
LEVEAEHHVLVITQHHIISDGWSMQVMVDELVALYQGQAELPALPIQYVDYAQWQRDWMA
AGEKQRQLDYWRTRLGTEHPVLELPLDHPRPALQSHRGARRQVQLDNALVAELKALAQRQ
EVTLFVLLLASFQTLLHRYSGQSRIRVGVPIANRNRLETERLLGFFVNTQVLQADVHGQM
AFDQLLAQVKQQALDAQAHQDLPFEQLVEALQPERSLSHNPLFQVMFNHQDNLRAAPLQL
PGLDLQAVDWAGHSTQFDLNLETEESAEGLWASLTYATDLFDATTVERLAEHWQNLLRAV
VNDASQAVDELAMLSAPQWQQMVEAWNDTSVDYPRERCVHTLFEARALAQPDALALQFKG
QALSYGELNRRANRLAHRLIAAGVGPDVLVAVHVERSLDMVIGLLATLKAGGAYVPLDPQ
FPADRLAFMLEDSRARVLLTQSHLDGSLAHPQGVQVLMVEADDNAVEHDPQVNVTPEHLA
YVIYTSGSTGTPKGVMVRHEALCSFTCGMAGTLDIGADARVLSLTTFSFDIFALELYVPL
TVGATVLLSGQELALDPEAIIDLVHSQCANVLQATPSTWRMLLESPRAQLLRGIKCLCGG
EALPSDLAQRLLDLQGPLWNLYGPTETTIWSAAHRLHEAQPLVGRPIANTALFILNAGLT
PSPVGAAGELLIGGVGLARGYHERPALTAERFVPNPYGAPGERLYRTGDLARYRADGVVE
YIGRVDHQVKVRGFRIELGEVEACLREQAGIREAVVLADNDRLIAYLVSSAPDAPEVYKA
ALRERLPDYMVPAHLMFLDSLPLTPNGKLDRKALPAVDAALLRTGHVAPVTPREQQVAAI
WADVLDLPQVGLDDHFFELGGHSLLATRVVSRVRQALALEVALKTLFEHPLLGDFVQALG
EEGVVAPALLKADRRQPLPLSYAQERQWFLWQLDPHSTAYHIPSALRLHGQLDLGALQRS
FDTLLARHESLRTHVRQDAAATVQVIEDSGLIEIDLADTDEASLKARVAEVVAQPFELLR
GPLLRVKLLRLAADDHVLVLVQHHIVSDGWSMQLMVEELVQLYAAFSQGHMPDLPALPIQ
YADYALWQRNWMEAGEKARQLAYWQAQLGGVQPVLELPFDYLRPAVQSHRGARLGIELQP
QLLAGLRRLAQGAGVTLPMVLLASYQALLHRYSGQEDVRVGVPIANRNRLETEGLIGFFV
NTQVLKADIHGQMSVVQLLQQVRQRSLEAQAHQDLPFEQLVEALQPERSMSLSPLFQVLF
NHRVTSAAHHLQRLTELDVEVLSWDEGVAQFDLALDVEESQATLRASLNYATDLFAPATI
ERMAGHWQNLLQAMVADQQQPISQLNLLGQDEQHHILQLWDQTDAGFSAKRLVHELVADR
ARENPDAVAVKFDAQTLSYGELDRQANRLAHALIARGVGPDVRVAIAMPRSAEIMVAFLA
VMKAGGVYVPLDIEYPRDRLLYMMQDSRAQLLLTHTRALQQLPIPDGLDSLAIDRTEEWA
GFSDTAPQVKLGGDNLAYVIYTSGSTGMPKGVAVSHGPLVAHIIATGERYETSPADCELH
FMSFAFDGSHEGWMHPLINGASVLIRDDSLWLPEYTYQQMHRHHVTMAVFPPVYLQQLAE
HAERDGNPPKVRVYCFGGDAVAQASYDLAWRALKPTYLFNGYGPTETVVTPLLWKARKGD
PCGAVYAPIGTLLGNRSGYVLDAQLNLQPIGVAGELYLGGEGVARGYLERPALTAERFVP
DPFGKPGSRVYRSGDLTRGRPDGGVDYLGSVAHQVKIRGFRIELGEIEARLREQDNVGET
VVVAHEGPTGKQLVAYVVPADTLLADETEFRDSLRRALKTHLPDYMVPTHFMFLAQMPLT
PNGKLDRKGLPEPDASLLQQAYVAPETELEQQIAAIWADVLRLPQVGLNDNFFEVGGHSL
LAIQITSRVQAELGLEVPLLEVFQTETLRAYVQAAATFRAGSAEDFDDLRDFLSELEAI