Protein Info for PS417_11680 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 16 to 39 (24 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 79 to 101 (23 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 146 to 166 (21 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details amino acids 210 to 238 (29 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details amino acids 279 to 296 (18 residues), see Phobius details amino acids 302 to 324 (23 residues), see Phobius details amino acids 336 to 357 (22 residues), see Phobius details amino acids 366 to 386 (21 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 269 (252 residues), 59.4 bits, see alignment E=1.5e-20 amino acids 220 to 382 (163 residues), 53.6 bits, see alignment E=8.9e-19

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU2540)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TYR5 at UniProt or InterPro

Protein Sequence (390 amino acids)

>PS417_11680 MFS transporter (Pseudomonas simiae WCS417)
MANPYAELFQVPGARAFVLAGMLARMPVSMTGIGLITMLSQVHGGYGLAGSVAAVFALAT
AFCAPQVSRLVDRYSQGRVLPVAALIGGGALLMVLLCTRLQAPNWTLFLFAALAGCMPNM
SAMVRARWTELYRGQPKLQTAFALESVLDEVCFIIGPPISVGLSVVLFPEAGPLVAALLL
AVGVTTFVLQRETEPPVHEHQDHHGGWLIASPSVLILMILLLAMGVIVGVVDVVSVAFAQ
HQGQPAAASIVLSVYAIGSCLAGLAFGTLKLKAPLPRQFLFCGVATALTTLPLLLVSNIP
GLAVAIFISGLFFAPTLIVSMALVEQIVPASRLTEGMTWLITGLSIGVAIGAASSGWMID
HFGATSGFWVALVAGAVVLGAAVLGYRRLG