Protein Info for GFF2283 in Xanthobacter sp. DMC5

Annotation: putative inner membrane transporter YedA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 38 to 58 (21 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 129 to 148 (20 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 185 to 205 (21 residues), see Phobius details amino acids 217 to 240 (24 residues), see Phobius details amino acids 252 to 269 (18 residues), see Phobius details amino acids 275 to 292 (18 residues), see Phobius details PF00892: EamA" amino acids 11 to 143 (133 residues), 76.4 bits, see alignment E=1.4e-25 amino acids 156 to 290 (135 residues), 45.8 bits, see alignment E=3.9e-16

Best Hits

KEGG orthology group: None (inferred from 75% identity to rru:Rru_A0388)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>GFF2283 putative inner membrane transporter YedA (Xanthobacter sp. DMC5)
MAQTPRFGTELLLLLVLSTLWGASYTFIKVGVETIPPLTFIAARTLIAGSLLAAILRARG
MRLPGDRASWARFLFQAGLNSVVPFTLIAWAEQTVDAGVATILNATSPIFAFLLTALATR
HEAVTARKLLGVPAGLAGTGFIVGFEALEGIGQQVWAQLAIVAATVCYAGAAIFGRSFKG
LDPMVPAAGSLLCGAAVLLPVSIAVDRPWTLAPSARSLVALGLLSVFSTALAFVIYFRLV
RTLGSIGTTAQAYLRVPIGVAIGVLCLGERLAPDAWIGLACVVAGVVAMTWQTRRSA