Protein Info for GFF2281 in Sphingobium sp. HT1-2

Annotation: Glycosyl transferase, group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF13439: Glyco_transf_4" amino acids 14 to 165 (152 residues), 84.8 bits, see alignment E=1.8e-27 PF13579: Glyco_trans_4_4" amino acids 15 to 156 (142 residues), 45.7 bits, see alignment E=2.4e-15 PF00534: Glycos_transf_1" amino acids 180 to 298 (119 residues), 55.6 bits, see alignment E=1.3e-18 PF13692: Glyco_trans_1_4" amino acids 183 to 304 (122 residues), 70.5 bits, see alignment E=4.8e-23 PF20706: GT4-conflict" amino acids 238 to 274 (37 residues), 28.1 bits, see alignment 2.6e-10

Best Hits

KEGG orthology group: None (inferred from 84% identity to sch:Sphch_0226)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>GFF2281 Glycosyl transferase, group 1 (Sphingobium sp. HT1-2)
MRIAIVTDAWTPQVNGVVRTLQTIQAELEHMGHEVKVISPDLYGSIPCPTYPEIRLALVR
SGVVGQAIAAFRPDAVHLATEGPLCFAARRWCLRGNVPFTTAYHTHFPDYVSQRTGLPAA
WFWRYIRWFHGPAQAVLVSTRSVRQQLRAHGVANVRKWGRGVDLNTFAGDLAPSALLADL
PRPIQLYVGRVAVEKNLEAFLASEHPGTKVIVGDGPARGALERAYPDARFLGAQFGADLA
AIYAGADVFVFPSRTDTFGLVMIEALAAGTPVAAYPVTGPIDIVTPETGALSERLEDAIA
AALLCDRAACAAYGRSFSWERSAQEFLAGLHPIDPVVMDSAA