Protein Info for GFF2269 in Sphingobium sp. HT1-2

Annotation: NLP/P60 family lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF18348: SH3_16" amino acids 68 to 115 (48 residues), 51.6 bits, see alignment 6.6e-18 PF00877: NLPC_P60" amino acids 192 to 274 (83 residues), 64.9 bits, see alignment E=5.9e-22

Best Hits

KEGG orthology group: None (inferred from 75% identity to sch:Sphch_0237)

Predicted SEED Role

"NLP/P60 family lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>GFF2269 NLP/P60 family lipoprotein (Sphingobium sp. HT1-2)
MTGQINTTRNAPPERTRFKLDGRSVALDHRVHAARGDLADISLAGVLFSAHYARAVELTC
VAPGAPILSQPSHNAEAVSELLRGESFHALDVTTDWAWGFCGHDGYVGYIRRDALDVKEA
VSHRIVNQSAPLFSRADIKAPIADHWPLGARFGGEAEDSFLATGDGFIHGRHAAPIDSPE
SDWVAVAQRYLGQPYVWGGRGHRGIDCSGLVQVALGECGIAVPRDTDLQCEGIGAPIEAS
APLQRGDLVFFPGHVGIMTDATHMLHANAHWMAVVVEPLTDVVARLAPDHEQPIIARRRI
AP