Protein Info for GFF226 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 637 transmembrane" amino acids 30 to 49 (20 residues), see Phobius details amino acids 93 to 113 (21 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 184 to 202 (19 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 247 to 265 (19 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 308 to 326 (19 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 389 to 409 (21 residues), see Phobius details amino acids 415 to 433 (19 residues), see Phobius details amino acids 444 to 463 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 74% identity to sch:Sphch_2802)

Predicted SEED Role

"FIG01224524: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (637 amino acids)

>GFF226 hypothetical protein (Sphingobium sp. HT1-2)
MNLQSWPAFRARAPHWFAILTAYADRHWKWLTFLIWIAILVGMLVDRWPAIHWLTLSDTD
DNIRFVQVKDWLAGQGWYDLRQYRLDPPGGANIHWSRLVDIPLAGLMLFFRAFVEQDLAD
RLACAIAPLLPLFLLMLSLGSIARRLAGDAVGARWAWLFAVLAPLAAQMGLGMFAPMRID
HHGWQLALALTMMAGLIDRNWLRGGVVAGVSSALSVAIGMEMIVYLAAGGALVALRWVFR
DGAGRRMLPYGLSLAGATSLCYVLFASYDNRHMVCDAISPIWVAVFGAAGAGMVLLSRLP
LRLWWQRLIAGMIVGGAVGLFFLLNWPQCLTPYQISPELQQLWLANIREAKPITAQAQSL
VVPLMALPAVGLLGLLWALWELRRDSDRLWAFAPIGLMMLFSTALLFWQLRAGPAAQLLA
IPPAAWAGWRLVTAIFTGSRRVRILAGIGTLLVGAIACAYPLYPQVIALWQQATGTKPKP
WRPSAIARTDAIKKANGRCRTLPALEVLDQLPPATIFTMVDLGPRIIATTHHSAVAGPYH
RNGATILDMHHAYDGPADAFRPIAAKHHATYLLVCPNFPEGTIYQSRSPRGFYADLMRGT
IPAWLQPVTLKTAMTLPYTLYKIDYSAPGGKKVAQQR