Protein Info for GFF2212 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 26 to 45 (20 residues), see Phobius details amino acids 52 to 73 (22 residues), see Phobius details amino acids 90 to 113 (24 residues), see Phobius details amino acids 146 to 164 (19 residues), see Phobius details PF01478: Peptidase_A24" amino acids 4 to 106 (103 residues), 78 bits, see alignment E=3.4e-26

Best Hits

KEGG orthology group: K02278, prepilin peptidase CpaA [EC: 3.4.23.43] (inferred from 66% identity to vap:Vapar_4443)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 3.4.23.43

Use Curated BLAST to search for 3.4.23.43

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (167 amino acids)

>GFF2212 no description (Variovorax sp. SCN45)
MQLACLLWLLFVAVYDFRQRRVPNWLVLAGAAVALAALASGMQPFGIEWSTALTGAAIGF
GALLLLYAIGLMGAGDVKFAGALGLWVGLQALLPIWVVASLLAGLHSALWLALQRWPVAP
RLSLMLLGRSSAASSGAASATARRRIVPYAAYLSLATAVWMVWGRQG