Protein Info for GFF2201 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 594 to 614 (21 residues), see Phobius details amino acids 621 to 640 (20 residues), see Phobius details PF09977: Tad_C" amino acids 41 to 132 (92 residues), 36.8 bits, see alignment E=6.8e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (675 amino acids)

>GFF2201 hypothetical protein (Variovorax sp. SCN45)
VLVNAAIALSLIVITLVGTEIGYLFFLKREFQKSADLAALSGAQALTTSSCTEAAAAAIS
NASQNLPTGFQLSSGDVVCGRWDPSSIPGPKYFSAGVAPFNGVQISLQRTPAMLLTGISG
GIQRQIQVQALAVKDEPSVVFSVGAKLVDVSPGGALTSILKIAGVNVNNACVGCYTGLVT
ANISPGDLLTALGIPVSADLTVGGLNALLAAKKVSVGQLVNVIATLANQSGLLAANAQLL
GALVNAGINVDSLLVQVGTDPAATDGTRGLFTVITAPTTSAALNTQINAFDLLKTALSVG
TSQHAVTLNQQVGALGLSVEARVIEPASIGIGGVGTTAYNSQIRVFASINTNASILGGIL
GALATQITLPISIDIGNSLGTVKKIDCNSTPTKATIDVDAPLLGACIGQISSTQALWSKS
NVCQTDLQPMSLVKILGVDLLAGKAYLPALNNPSTVVLSPGDTVTTGGNPLAIGTTVSTL
LSDLLKLLLGNPGIAGTPANRPTTPAIAATLANHYIPTTTGATMNQSAVDAVQAALTADG
LTWNRPLLGILSQSMPSEWAGNVASCKTSFTVYQTSCVRSTLVDSLQTANQNGLLTGILS
GLVQLISGLLGVGASDGGTPLLAGLLGPLVNLLQPVLDVLGKFVSDLLQMLLGLQLGQTD
VHLHSISCRNAKLVY