Protein Info for PS417_11220 in Pseudomonas simiae WCS417

Annotation: signal peptide protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13372: Alginate_exp" amino acids 69 to 457 (389 residues), 440.6 bits, see alignment E=2.5e-136

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU2408)

Predicted SEED Role

"FIG022068: Hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U8F2 at UniProt or InterPro

Protein Sequence (463 amino acids)

>PS417_11220 signal peptide protein (Pseudomonas simiae WCS417)
MTRRTGWGLAVLWPLLAGSVHADEQATRPAIKANRWQEDWSVLQNPALRTQPLDSLKYIP
LSGANPFTYLSLGATLRERFEMNDASGFGVRDVKRDRYLIQRFQVHADLHLNENWRVFTQ
LEDVRAYDKTTIGGADQNRVDLRLAFAEYVNAFSSGTLKARVGRQDFAFDLQRFISSRDG
PNVRQSFDALWADWETSNWRFIGIASQPVQYQDGRHFDEKSNSDARFHMVRVERLVGGKN
ELSAYYGVYERSAAHYLDADGDETRHLFDARLGGAAMGFDWDVEAMLQSGSVGNKDIRAW
AGGSRTGYTFDSLAWKPRLGLQLDIASGDRKTGDGTVGTFNPLFPNGYYFSLAGYTGYSN
LIHVKPSITVKPIDKLSVQTAIGLLWRQTTSDAVYTQPNLPVAGTAGQGDRWTGAYAQLR
TDYVFSPNLTGAVEAVHYDVGQTLRDAGGDDSNYLGVELKFSW