Protein Info for GFF22 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 879 PF09937: DUF2169" amino acids 27 to 298 (272 residues), 246.8 bits, see alignment E=6.5e-77 PF00805: Pentapeptide" amino acids 559 to 581 (23 residues), 19.3 bits, see alignment (E = 1.3e-07) amino acids 585 to 622 (38 residues), 33.4 bits, see alignment (E = 5.1e-12) amino acids 624 to 660 (37 residues), 15.1 bits, see alignment (E = 2.7e-06) amino acids 752 to 789 (38 residues), 20.7 bits, see alignment (E = 5e-08) amino acids 811 to 850 (40 residues), 28 bits, see alignment (E = 2.6e-10) PF13599: Pentapeptide_4" amino acids 746 to 815 (70 residues), 29 bits, see alignment E=2.2e-10

Best Hits

KEGG orthology group: None (inferred from 56% identity to vpe:Varpa_2894)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (879 amino acids)

>GFF22 hypothetical protein (Variovorax sp. SCN45)
MKTVKPLRLSVITRPFLRQAEQRLAVTTLCMVSMNAKPVLTPEPEFWKTLSEELGPATAI
DLGIPKVRAEMLATGFAYTAHQQEKTFCAARLQVGNLEKDLAVFGDRFWIGARPSPPQPF
EAMRIDWTHAYGGPGFADNPLGRGHGMETVNGHEVQRVPNIEDPAHRLHHPGDRPEPAGF
GPLDIAWPRRLRLIGKQYDGHWRENLFPGFAEDMDWQLFNAAPADQRFQDAAEIAPGTPY
TVWNMHPETPIQQGRLPQWRALAVIARHRLPGQIEEVPQRLTTAWFFPHLERVVLVFHGE
TRIDEDDASDISHVMPALEAVGQPRGLAHYATVLHQRCDPEKGALFMFRDDELMPDEAIG
PWLDQPGTGDSALVRNMRERGAQAREDLKQKAMAAGHKARHFNDRRLPEPFSRMPTLREL
PDFVEQADRHARAQREQGAVERERLQREADANAKESMKVGFDTGKLVREHDAMRPKGPPQ
VDSAELLRGFEGIPAATGTAPLPERQVEAMRKLARDAERGLLALYRGSAQHQSPIDAPSD
ERQAALRVKVLSILQANRDFTGMDLTGADLSDMDLQGACFRRALLEGADLRRARCEGADF
SEAVLVRAQLSSGDFTRAIFRDTNLAGIHCEQAGFSHALFEGATFEKLKFVRCDFSSARL
HHLHVIESQLLHCRFDAIDAAYIGFLSDVAIEDCSFRGARLVKAGFLGCRVAGLDFTGAE
LEACAWTHMNCDEHMSFARALLRTTCFAGNSSLRNADFEEATLVQCSLREIPMEGARFVR
ATLDTCDLSSCNLTAADLGAAQTPESLFIRSNLSRASLRAANLMNANFNKARLLSADLRE
ANLFRADMSQIVIDDVTETRDAYIVHTKTVPAARAAAVE