Protein Info for PS417_11145 in Pseudomonas simiae WCS417

Annotation: peptide ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 PF00005: ABC_tran" amino acids 26 to 184 (159 residues), 91.7 bits, see alignment E=1.6e-29 amino acids 302 to 449 (148 residues), 108.8 bits, see alignment E=8.3e-35 PF08352: oligo_HPY" amino acids 235 to 262 (28 residues), 15.1 bits, see alignment (E = 6.4e-06) amino acids 501 to 532 (32 residues), 25 bits, see alignment (E = 5e-09)

Best Hits

KEGG orthology group: None (inferred from 54% identity to axy:AXYL_03700)

Predicted SEED Role

"Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UJU4 at UniProt or InterPro

Protein Sequence (542 amino acids)

>PS417_11145 peptide ABC transporter ATP-binding protein (Pseudomonas simiae WCS417)
MSANPVLLNVEHLKIRVGEHGPLAVDDLSFSIAPGEIVALVGESGSGKTMAARAAIGLLP
LPMQVCGGRLDFQGRDLASVSTEALRAIRGASIGMVFQEPMVSLNPALKIGQQMSEALKL
HTDLDPPQIRERCLTMLRRIGIKAAERCLESYPHQFSGGMRQRIMLASVMLLRPALLIAD
EPTTALDCLAQLDVIELMLELTREQGTAILFISHDLSLVARYAHKVVVMRHGKAVEQGSI
EDILLAPKAEYTRQLLEALPRRGVLAPLPVSNEPLVEVDQVCIEHPGPTTFWGKRQHTRV
VHSASLVIAPGETLALVGGSGSGKTTLGRSLVGLIKPCAGSIRFKGVDILKAANRTHRLQ
CQMIFQDPYSSLNPRMKIGEILAEPLRHEPGLNAAERRERVTQTLKDIGLGEQFVERFPH
QLSGGQRQRVAIGRALVRHPQLVIADEPISALDMTIQKQILELFERLQAQYGFACLFISH
DLAAVERIAHRVAVMHQGNVVEVGAREQIFDHPQHPYTRQLLAAASPLEQLPDGGYRIRP
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