Protein Info for PS417_11135 in Pseudomonas simiae WCS417

Annotation: peptide ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 9 to 30 (22 residues), see Phobius details amino acids 64 to 81 (18 residues), see Phobius details amino acids 95 to 122 (28 residues), see Phobius details amino acids 131 to 168 (38 residues), see Phobius details amino acids 177 to 200 (24 residues), see Phobius details amino acids 238 to 264 (27 residues), see Phobius details amino acids 281 to 307 (27 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 97 (97 residues), 60.3 bits, see alignment E=2.1e-20 PF00528: BPD_transp_1" amino acids 113 to 312 (200 residues), 139.8 bits, see alignment E=8.8e-45

Best Hits

Swiss-Prot: 41% identical to Y1092_BRUSU: Putative peptide transport system permease protein BRA1092/BS1330_II1084 (BRA1092) from Brucella suis biovar 1 (strain 1330)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 70% identity to smd:Smed_2440)

MetaCyc: 39% identical to glutathione ABC transporter membrane subunit GsiC (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U0Q3 at UniProt or InterPro

Protein Sequence (313 amino acids)

>PS417_11135 peptide ABC transporter (Pseudomonas simiae WCS417)
MLRFILQKLAMAVPTLLLISVMVFALIRLIPGDPALLMLGDMADPQSLADMRHTLGLDHS
LVTQFLIWFKAVLSFDLGFSISTKQAVLPLILDRFSVSATIVLVAVLFATLIAVPIGLIA
AWKQNSALDLGLVSIATLLLSIPSFWLGLLLLHAFGIQLGWLPVVGYVSFSQAPWQAMSY
MVLPVVTLTLVEVGAITRMARASTIEVLRLEYIAHARAKGLSERAVLWKHALPNAFAPTW
TLVGLILGNLLGGIAVLETVFTLPGIGRLMVDAIFARDYPVLQGCLLLITFIYVLVNLCV
DLLYPLFDPRVKL