Protein Info for GFF2182 in Variovorax sp. SCN45

Annotation: Inner membrane component of TAM transport system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1362 transmembrane" amino acids 30 to 53 (24 residues), see Phobius details PF04357: TamB" amino acids 1003 to 1361 (359 residues), 211.6 bits, see alignment E=1.1e-66

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 86% identity to vpe:Varpa_5179)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1362 amino acids)

>GFF2182 Inner membrane component of TAM transport system (Variovorax sp. SCN45)
MQNDANNTDPATPQTPAVVKRSRTRRALRAFAWTVLGLFVAVLLLGAGAWWWLGSNKSLA
FALAQAAQRLPAGQTLESRDVTGSLRTGGRIGWLKYQSESIAVEVNDATIGWQLAPLFQR
KVQLGEVHAKQVLIEKRGPPSDKPTEPLQQLALPVDVDVPFRIDEVRWAGPPALQALNLS
GSYSYKAAEHALEVKGVDIADGHYSARVKLQGPAPMAIDASLNGRVKAPLAEDHDIDVLA
EATVKGTLTGTEARLQVAAELKPAEESPDAPMEARLQAQIAPWLPQPVIDAKADLRNVDA
SSLWPGAPETRLTGTVELTPDADTGPAAWKASADIRNSVAGPWDEEKLPVEQVQARVGFD
GTSWTIPEATVRAGGGRIDAAGKWSPAPAPWQAQATVRGVRPGALYTELSGAPVSGTLKA
EQKESTISFDAALRAEGGAGSKALPGFALDRALAQGQWKDQVLDLRTLRIEAQRASIDGK
LQVRVADQAGSGKLSLVLPGGSAQVEGRIAPTAGSGDIKASIDDADAVQRWVQGLPGLSN
VFANASAKGSAKLDANWQGGWQTIQRRLQNATAPAQRGTAEPTLKAMLGVPRLDLHLPAS
EPGGAATAVQLNGLRAELAGSLAQASLTLQGEATTGTQKITIDTRASGGLAGNDQWRAAL
ASLRLQAQDSVSPGSAPWVLELSREVTATIRSTSGNAARLDIEASAAAATLRGPVPGTVR
IDWQPLRFSQSGAAPNRVFRVQSKGQLQGLPMAWAGALGANTTLGEYGISGDLMFDGDWD
IDAGDTLRAKARLARQSGDIRVQAGEAALVTRIVSTGTGTASERTMNSATAPNGVEAPST
PAGLRQAELRLDAQGDAVRASLTWDSERAGKINADIDTRVQQRAGGWQWAPDAPLGGTIK
ASLPNLGVWSMLAPPGWRIAGTLDAAATLSGNRAVPRWNGTLGADKLALRAPVEGLDLRD
GRLRASLNGERVEITEFTLKGGAGSSARIAGQSGNRSTAASEARSDGGTLSATGDLSWGP
ASGTASGVRMAMQGQLRALRVLVRTDRQVTLSGDLQAKLDNGQFTVRGKLKTDRAVIILP
DETAPSLGSDVVVRSAAKDREAAEAAKRESERADAQAAKPQTAKPPDIVVNFDLGDDFAV
QGRGITTRLEGDLEIRSTRLNAPPRITGEVKTVKGQYRAYGQQLDVETGVARFNGPFDNP
ALDILAIRPNLSQRAGVQITGTAQSPRVKLYSEPALSDAETLSWVILGRASATSGGESAL
LQQAALSLLGKIGGSGSGGSLASRFGLDELGFKGPGSGGDLRESAVTLGKRLSKDFYITY
ERSIGGTFGTLFIFYDLTTKLTLRGQAGQTSGLDLIYTVKYD