Protein Info for PS417_11115 in Pseudomonas simiae WCS417

Annotation: peroxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 TIGR01413: Dyp-type peroxidase family" amino acids 13 to 308 (296 residues), 276.1 bits, see alignment E=2.1e-86 PF04261: Dyp_perox_N" amino acids 13 to 141 (129 residues), 111.1 bits, see alignment E=4.9e-36 PF20628: Dyp_perox_C" amino acids 145 to 308 (164 residues), 192.5 bits, see alignment E=4.7e-61

Best Hits

KEGG orthology group: K07223, putative iron-dependent peroxidase (inferred from 82% identity to pfo:Pfl01_3258)

Predicted SEED Role

"Predicted dye-decolorizing peroxidase (DyP), encapsulated subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UGJ5 at UniProt or InterPro

Protein Sequence (318 amino acids)

>PS417_11115 peroxidase (Pseudomonas simiae WCS417)
MTPSSVQPPLEPQSVCHPITSSAIFMVATVAPGGEDQVRGWCADLAGLVRSVGKRVPAGN
LTCVCGFGSDAWDRLFGAPRPAALHPFREFGVEGRKAVSTPGDILLHIRAEQMDLCFELA
THVMAALGDSVKVVDEVQGFRYFDMRSIIGFVDGTENPVGRKAVGFTIVGDEDNEFRGGS
YVLVQKYLHNMTAWNSLTVEAQEKVIGRTKLSDIELDEETKPSNSHSALTVITDKNGEEV
KILRDNMPFGRPGAGEFGTYFIGYARSPEPLELMLENMFVGRPVGNYDRLLDFSTAVTGG
LFFVPSADLLEELAERKL