Protein Info for GFF2178 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 transmembrane" amino acids 7 to 33 (27 residues), see Phobius details amino acids 39 to 60 (22 residues), see Phobius details amino acids 84 to 108 (25 residues), see Phobius details amino acids 120 to 138 (19 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 187 to 208 (22 residues), see Phobius details PF01545: Cation_efflux" amino acids 7 to 217 (211 residues), 98.9 bits, see alignment E=1.7e-32

Best Hits

KEGG orthology group: None (inferred from 73% identity to rce:RC1_2581)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>GFF2178 hypothetical protein (Xanthobacter sp. DMC5)
MTEQGVLRISIGVTLLLALLGIVFGLLSGSYAIVFDGVYALTDASMTVLALVVARLIATS
TAPGASAKGLVAHFTMGFWHLEPMVLGLNGILLMSASVYALINAVGSLMSGGRALDFDQA
ILYAVITVAVAFFMALFVRRANRTIRSDFLALDAKAWLMSAGLTFALLVAFLVGLAVQGT
PRAWISPYIDPVALAVVCLVIIPLPFATVKQALADILLVTPPALKEHVDAVAAAIVARYG
FLSFRSYVARVGRGRQIELYFIVPQGWPAMRLEQWDVIRDEIGAAIGDDTPDRWLTIAFT
TDPEWAD