Protein Info for PS417_11070 in Pseudomonas simiae WCS417

Annotation: rhizopine-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00532: Peripla_BP_1" amino acids 25 to 246 (222 residues), 66.7 bits, see alignment E=4.8e-22 PF13407: Peripla_BP_4" amino acids 25 to 282 (258 residues), 201.5 bits, see alignment E=3.6e-63 PF13458: Peripla_BP_6" amino acids 51 to 277 (227 residues), 34 bits, see alignment E=5.2e-12 PF13377: Peripla_BP_3" amino acids 159 to 295 (137 residues), 34 bits, see alignment E=6.5e-12

Best Hits

Swiss-Prot: 46% identical to MOCB_RHIML: Putative rhizopine-binding protein (mocB) from Rhizobium meliloti

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU2383)

Predicted SEED Role

"Inositol transport system sugar-binding protein" in subsystem Inositol catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U8C5 at UniProt or InterPro

Protein Sequence (308 amino acids)

>PS417_11070 rhizopine-binding protein (Pseudomonas simiae WCS417)
MNRYSLFAATLLLLFSQWSFAAYRIGVSIARVDDNFMTYVRTGLEAAARQQDVQIQFEDA
QGDVVRQLNQVEGFLNQKVDAVIVLPVDTAATANMTRAAVAAKTPLVYVNRHPDERTLPK
GVVTVASNDIEAGQLQMRYLAEKLAGKGNVAIIMGDLAQNATHDRTEGAKQVLKDFPGIK
VVEQQSADWQRSKGMDLTSNWLLAGTQFDAIVANNDEMAIGAAMALQQAGKAKGDVAIVG
IDGLPDGLAAIKRGLLTASVFQDPKAQATQAVQAAVRMIKGEAIEPEVWVPFELIKPEQV
AVFEQRYK