Protein Info for PS417_11035 in Pseudomonas simiae WCS417

Annotation: arabinose ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 78 to 95 (18 residues), see Phobius details amino acids 101 to 124 (24 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details amino acids 221 to 240 (20 residues), see Phobius details amino acids 256 to 288 (33 residues), see Phobius details amino acids 300 to 317 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 56 to 314 (259 residues), 128.7 bits, see alignment E=1.2e-41

Best Hits

Swiss-Prot: 62% identical to ARAH_SHIFL: L-arabinose transport system permease protein AraH (araH) from Shigella flexneri

KEGG orthology group: K10538, L-arabinose transport system permease protein (inferred from 97% identity to pfs:PFLU2374)

MetaCyc: 62% identical to arabinose ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-2-RXN [EC: 7.5.2.12, 7.5.2.13]

Predicted SEED Role

"L-arabinose transport system permease protein (TC 3.A.1.2.2)" in subsystem L-Arabinose utilization (TC 3.A.1.2.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.12 or 7.5.2.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U0N8 at UniProt or InterPro

Protein Sequence (322 amino acids)

>PS417_11035 arabinose ABC transporter permease (Pseudomonas simiae WCS417)
MTTQHNVLPTARKPLDLRALLDNWAMLLAAVSIFLLCALLIDNFLSPLNMRGLGLAISTV
GIAACTMLFCLASGHFDLSVGSVIACAGVVAAIVMRDTDSVMLGIGAALLMGLMVGLING
IVIAKLRVNALITTLATMQIVRGLAYIFANGKAVGVSQDQFFVFGNGQLMGVPVPILITI
LCFLFFGWLLNYTTYGRNTMAIGGNPEAALLAGVNVDRTKILIFAVHGVIGALAGVILAS
RMTSGQPMIGQGFELTVISACVLGGVSLSGGVGMIRHVIAGVLILAIIENAMNLKNIDTF
YQYVIRGSILLLAVVIDRMKQR