Protein Info for GFF2160 in Xanthobacter sp. DMC5

Annotation: Adaptive-response sensory-kinase SasA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 160 to 175 (16 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details PF00672: HAMP" amino acids 215 to 264 (50 residues), 38.1 bits, see alignment 2.4e-13 PF00512: HisKA" amino acids 269 to 325 (57 residues), 34.8 bits, see alignment 2.1e-12 PF02518: HATPase_c" amino acids 369 to 476 (108 residues), 88.7 bits, see alignment E=5.4e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (479 amino acids)

>GFF2160 Adaptive-response sensory-kinase SasA (Xanthobacter sp. DMC5)
VSGWLKRLLRFLWPGSLAGRLVLLLVATLALAQVLLVLVLQNEHDAVVAGIVRGQALSQT
VTLTRLIESMPREQADRLAGAFTTRGTCAWVSADPPDPHEMTSTEEGLASLLSRRLHGVG
NGAPAVHIDTDGLWDRRCPERSSEDFPWLRRSTGGPSQPLRPGLGVVALSVPLSGQRWLH
VDAVVGLPGIWSRPIVLSFLISALAVSLVTVACVRFQTRSLRSLADASERFGRGESVPPL
DVRGPSEVAAATRAFNTMQQRLSQFVRDRMRLLAAISHDLRTPLTTLRLKAEFVDDAEVR
NDIVATIDELVAICEATLAFTRAEATSEETRTVDIEDLCADVVEEFASVGADARMADQRA
ARVLLPCRPVAMRRALRNLVDNAVRYGRRAEVTVGQAGSGAVSIRVEDEGPGLPEDRFEE
AFQPFVRLEPSRSTETGGIGLGLAIARSIVKAHGGELTLANRPGGGLCAEIVLPTAERS