Protein Info for GFF2152 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 24 to 44 (21 residues), see Phobius details amino acids 55 to 72 (18 residues), see Phobius details amino acids 93 to 123 (31 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 223 to 240 (18 residues), see Phobius details amino acids 246 to 266 (21 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details amino acids 314 to 352 (39 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 398 to 420 (23 residues), see Phobius details TIGR00785: transporter, divalent anion:Na+ symporter (DASS) family" amino acids 6 to 413 (408 residues), 206.6 bits, see alignment E=2.9e-65 PF00939: Na_sulph_symp" amino acids 8 to 413 (406 residues), 103.7 bits, see alignment E=1.9e-33 PF03600: CitMHS" amino acids 15 to 366 (352 residues), 227.9 bits, see alignment E=2.9e-71 amino acids 239 to 418 (180 residues), 84.1 bits, see alignment E=1.5e-27 PF06808: DctM" amino acids 221 to 413 (193 residues), 39 bits, see alignment E=7.1e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to seg:SG3246)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (422 amino acids)

>GFF2152 Putative membrane protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MEPITLTLCLLVFAIVMFVWEKVPLAVTSMIVCVALVITGVLNIKQAFAGFIDTNVILFV
AMFIVGGALFETGMANKVGGVITRFAKTEKQLIFTIMVVVGLMSGVLSNTGTAAVLIPVV
IGVAAKSGFSRSRLLMPLVFAAALGGNLSLIGAPGNLIAQSALQNIGGGFGFFEYAKIGL
PMLICGILYFLTIGYRFLPNNATGGEVGSVGVQRDYSHVPQWKQRLSLVVLIATILGMIF
EKKIGVSLAVTGCIGALVLVVSGVLTEKQAYKAIDSQTIFIFGGTLALAKALEMTGAGKL
VADYVIGMLGQNSSPFMLLIAVFALSVVMTNFMSNTATTALLVPVSLSIAAGMGADPRAV
LMATVIGGSCAYATPIGMPANMMVLSAGGYKFVDYAKAGIPLIIVSTIVSLILLPILFPF
HP