Protein Info for GFF2130 in Sphingobium sp. HT1-2

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 19 to 38 (20 residues), see Phobius details amino acids 51 to 75 (25 residues), see Phobius details amino acids 86 to 104 (19 residues), see Phobius details amino acids 110 to 131 (22 residues), see Phobius details amino acids 143 to 164 (22 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 225 to 246 (22 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details amino acids 284 to 301 (18 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details amino acids 348 to 367 (20 residues), see Phobius details amino acids 374 to 395 (22 residues), see Phobius details PF07690: MFS_1" amino acids 36 to 356 (321 residues), 129.8 bits, see alignment E=6.1e-42 amino acids 227 to 395 (169 residues), 41.2 bits, see alignment E=5.2e-15

Best Hits

KEGG orthology group: None (inferred from 46% identity to avn:Avin_03770)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (403 amino acids)

>GFF2130 Uncharacterized MFS-type transporter (Sphingobium sp. HT1-2)
MTHSAALPLPRDDAPLSRFAILLMAVACGTMVANLYYAQTLIDVIGPEIGMSAGVAGLIT
TLTQLGYGLGIILVVPLADLFENRRIVLISAVATVLGCIAIALSNGPATFLIASVMTGVG
ATGVQVLIPLASHLAPPERQGRVVGTVMSGLLFGIMLSRPIASFLAGSMGWRATFLLSAG
VIALVAIALLIACPQRRPKGGMHYGEVLSSTFSQLGKYRVVRMRAFYQASMFAAFNLFWT
AAPLSLIHDFGLGHNGIGAFALAGAGGALVAPVAGWLADRRLTGPASLGALIALSIGFLL
ADWTVAAGSLIGFTIMAVLIDAAVQVSQITGQKLIFSLDPHARGRINAAYMTVMFVVGAL
GSVIGSTTYEAGGWSLSAIAGAAIGGVAALVFILFDRGASATR