Protein Info for PS417_10835 in Pseudomonas simiae WCS417

Annotation: major facilitator transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 90 to 108 (19 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 148 to 171 (24 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 246 to 269 (24 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details amino acids 312 to 330 (19 residues), see Phobius details amino acids 336 to 357 (22 residues), see Phobius details amino acids 368 to 391 (24 residues), see Phobius details amino acids 403 to 422 (20 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 388 (361 residues), 174.1 bits, see alignment E=2e-55

Best Hits

Swiss-Prot: 42% identical to NICT_PSEPK: Putative metabolite transport protein NicT (nicT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 70% identity to reh:H16_A1737)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UDW7 at UniProt or InterPro

Protein Sequence (438 amino acids)

>PS417_10835 major facilitator transporter (Pseudomonas simiae WCS417)
MPTAPAPATNEAIAALYHKLNWRLLPLLFIGYVFAYLDRINVGFAKLQMQSDLGLSDAAY
GAGAGIFFVGYVLFELPSTLMLPRIGARKTFSRILVLWGITSACMLFVRDVPTFYAMRFL
LGVFEAGFAPGMIYYLSRWYGPSRMARAIAIVFIAGPMGGILGGPISAWLITTFAGVGGL
AGWQWMFLIEGLPCVFLGVLMYVVLCDRPADAPWLNAAEKQLLETELGTASARSHSFRTV
LRDPKLYVLASAYFCIIFSIYAMSFWLPAVIKALGVNDTQQLGWYAALPYVGAALGMYWI
GRRSDRLGERRLHCAIPAATGAVLLILYPLAGGNLLVSMALLTLSISMMFMAYTVLWAMP
SEHIKGEAAAGGIALINTIGLSGGFWGPAMIGWAKTATGSLDTGLIAVGCVFLCAAFVII
ATTPRTRTGQTGDYIRSH