Protein Info for GFF2099 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 32 to 51 (20 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 151 to 169 (19 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 209 to 231 (23 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 265 to 282 (18 residues), see Phobius details PF00892: EamA" amino acids 3 to 142 (140 residues), 59 bits, see alignment E=3.1e-20 amino acids 151 to 280 (130 residues), 55.3 bits, see alignment E=4.5e-19

Best Hits

KEGG orthology group: None (inferred from 75% identity to oca:OCAR_7706)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (348 amino acids)

>GFF2099 hypothetical protein (Xanthobacter sp. DMC5)
VKLGIVFALISAGLFGASTPLAKLLLGAIDPWMMAGLLYLGAGAGLAAVHLSRDALRLPA
VEAPLRRTDVSWLALVILTGGVLGPLLLMFGLARTDGASASLLLNLEGVATMAIAWIAFR
ENVDRRLLLGALAILAGAALLSWQGRATLDLGAVLIAGSCLCWGIDNNLTRKLSSADPVQ
IAMLKGLIAGTINLVIALGHGAALPSGAAIAAAAVVGFFGYGVSLALFVLALRHLGTART
GVYFSLAPFVGAVLSIALFGEAITFQLVIAGLLMALGLWLHLSEQHEHEHAHEALEHEHL
HRHDAHHQHAHDADTPSGEPHSHWHRHVPMVHRHPHYPDIHHRHGHGA