Protein Info for GFF2099 in Sphingobium sp. HT1-2

Annotation: Uncharacterized membrane protein YoaT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 42 to 61 (20 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 125 to 148 (24 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 188 to 205 (18 residues), see Phobius details amino acids 217 to 238 (22 residues), see Phobius details amino acids 258 to 277 (20 residues), see Phobius details PF05675: DUF817" amino acids 32 to 268 (237 residues), 353.1 bits, see alignment E=4.1e-110

Best Hits

KEGG orthology group: None (inferred from 72% identity to swi:Swit_3105)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (284 amino acids)

>GFF2099 Uncharacterized membrane protein YoaT (Sphingobium sp. HT1-2)
MNDPTGATRFARIRAHLESVRVAAGPRAWAYEFLLFGFKQGWACLFGGLMLALLLATHLF
YPAGAPLHRYDFLTLSAVTIQIAMLALRLESPREALVICAFHLIGTIMELFKTHAGSWIY
PEASLLHIGAVPLFSGFMYAAVGSYIARVWRIFDFGFSRYPPVWATVLLASAIYVNFFAH
HWLPDVRIALFAAAILLFGRSWIWFTPWREPRRMPLLLGFFLVALFIWLAENIGTFANAW
TYPSQRHGWEMVSLMKLGAWYLLMIISFVLVSLIHGIRRADQIR