Protein Info for GFF2098 in Xanthobacter sp. DMC5

Annotation: Efflux pump membrane transporter BepE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1090 transmembrane" amino acids 32 to 51 (20 residues), see Phobius details amino acids 365 to 384 (20 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details amino acids 417 to 440 (24 residues), see Phobius details amino acids 463 to 487 (25 residues), see Phobius details amino acids 497 to 518 (22 residues), see Phobius details amino acids 563 to 583 (21 residues), see Phobius details amino acids 929 to 948 (20 residues), see Phobius details amino acids 955 to 975 (21 residues), see Phobius details amino acids 981 to 1005 (25 residues), see Phobius details amino acids 1026 to 1046 (21 residues), see Phobius details amino acids 1053 to 1079 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 25 to 1079 (1055 residues), 460.8 bits, see alignment E=1.4e-141 PF03176: MMPL" amino acids 328 to 526 (199 residues), 24.4 bits, see alignment E=2.1e-09 PF02355: SecD_SecF_C" amino acids 360 to 490 (131 residues), 26.1 bits, see alignment E=7.8e-10

Best Hits

KEGG orthology group: None (inferred from 78% identity to mes:Meso_2286)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1090 amino acids)

>GFF2098 Efflux pump membrane transporter BepE (Xanthobacter sp. DMC5)
MSETSKGETHSGENRPLGIAGVLTRTFIASPLTPLLLLAAFAFGLIALITLPREEEPQIS
VPMVDIRVSAQGLKAEDAVKLVTEPLETIVKAIDGVEHVYSQTEDDGVLVTARFLTGTSP
DAAILRVHEKVRANLDRIPVGITEPLIVGRSIDDVAILVLTLVPKPEAASRWTANDLTRV
ARELQADISKLPDIGLTYIVGEQPEEIRVAPDPERLSLYGITLAQLQGKLEGANRTFNTG
TVREAAGQRTLVAGQTLQTPSEIGGILLTSRDGRPVYVRDVANVTLATQPAEHYVTHIEK
GPDGLTRRPAVSLAIAKRPGTNAVVIAEEVLRQIEAAHGSTLPADVEVKVTRNYGESANE
KANELLLHLGLATVSIVVLVGFAIGWREALVVAVVIPTTILLTLFAARLMGYTLNRVSLF
ALIFSIGILVDDAIVVIENIARHWAMKDGRSRAQGAIDAVAEVGNPTIVATLTVVAALLP
MLFVSGMMGPYMSPIPANASAAMVFSFFVAVVLTPWLMLKIAGRAGQDDAGHGGDHGEAA
DGGRLGRFYVRVARPILTSRARAGAFLATVGVATLASLSLFYTHAVTVKLLPFDNKTELA
VILDMPADTPVERTDSTLNAMVNALSDLPESVSFQTHAGTAAPFNFNGLVRHYGLRSAPK
QGDIQINLKEKGERSRSSHEIALDVRNRLKSIALPSGSSLRVVEPPPGPPVLATLLAEIY
GPDPDTRRSVARKVRQAFESVPFIVDVDDSFGTPGERVRLAIDQDNLEFYKVEQGDVYDA
IRGIFAGGTLGYSHRGGGRAPIPIRLEMSKGNKAVDERTLATPVPANALPGGRGVVELGD
VVRVVREPASFPIFRHNGRPAEMVTADLAGTYEAPVYGMMAVSKALENMDFGSLPKPVIA
LHGQPSDETKPTLLWDGEWEVTWVTFRDMGGAFIVAILGIYILVVAQFGSFKLPLVILTP
IPLTFIGIMTGHWLFGAPFSATSMIGFIALAGIIVRNSILLVDFIRHARTPGRPLEEVLL
QAGAIRFKPILLTALAAMIGAAVILTDPIFQGLAISLLFGLASSTALTVLVIPAIYVVLR
GRRTDGPQAV