Protein Info for GFF2081 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 transmembrane" amino acids 58 to 84 (27 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details PF07332: Phage_holin_3_6" amino acids 22 to 118 (97 residues), 34.5 bits, see alignment E=9.5e-13

Best Hits

KEGG orthology group: None (inferred from 58% identity to sch:Sphch_0549)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (124 amino acids)

>GFF2081 hypothetical protein (Sphingobium sp. HT1-2)
LTQEPADTVATPQTEGNEGSVRATFARLYTDGRAYAQAEVERQKLRAGIAGAGIRNAAIL
GIVALMLLFAAIVTLLIGLVIALSAMIGPLWATLAVFGGAVLIAVLLLLLAKGQISHMLK
TIKP