Protein Info for GFF2077 in Xanthobacter sp. DMC5

Annotation: Protein adenylyltransferase SelO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 PF02696: SelO" amino acids 21 to 472 (452 residues), 390.4 bits, see alignment E=5.8e-121

Best Hits

Swiss-Prot: 66% identical to SELO_BRADU: Protein adenylyltransferase SelO (selO) from Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)

KEGG orthology group: None (inferred from 82% identity to xau:Xaut_1167)

Predicted SEED Role

"Selenoprotein O and cysteine-containing homologs"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (503 amino acids)

>GFF2077 Protein adenylyltransferase SelO (Xanthobacter sp. DMC5)
MTTSSTTQPTLKTGPAFPFDNSYARDLAGFYAPVLPTPVEAPALVKVNAALAELLGLDPA
DLATPEGVAVFAGLAVPEGAEPIALAYAGHQFGHFSPQLGDGRAILLGEVVGRDGLRRDI
QLKGSGPTPFSRRGDGRAALGPVLREYIVSEAMAALGIPTTRALAAVTTGERVVRDRALP
GGVLARVAASHIRIGTFQFFASRKAFDAVKQLADYTIARHYPDLVGAENPYLALLDGVIG
RQAALVARWLCVGFIHGVMNTDNMSVSGETIDYGPCAFMDAYDPNTVFSSIDEMGRYAYG
NQPDIAHWNLARFAECLIPIMGENREAAIAAANAALGTFPARFYAAYHAGLAAKIGLPEA
SEEDVALAHDLLNVMLGSKADFTLTFRRLGALAEDEDAGGPVRDLFLDREAFDAWAERWR
ARLAETGRSGADIRAGMDAVNPLFIPRNHLVEEVIAAAIERSDLGPFERLNTVLTHPYEE
QPDFAAYAGLPPSMEGYRTFCGT