Protein Info for GFF2074 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 23 to 46 (24 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 127 to 151 (25 residues), see Phobius details amino acids 186 to 204 (19 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 264 to 286 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 78% identity to vpe:Varpa_5292)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (295 amino acids)

>GFF2074 hypothetical protein (Variovorax sp. SCN45)
VSLRGAWSRVQALRQESVRSDELLMQAAHIGCVPILLAYGCAGLVYGNLPMFTPVGFVDM
PGACAWLTAAMAFALAIFAIDWLVRGELSVAPPPVTVVKRIWQPGQFPLPVLPSHVFPQP
RSSPLRIGCLSVAAVACASALVGRATLALGWQAFARPGGLAPQAEWPLYPLQWVWPWLLP
LARDRFVLGLFVVGAALFVAAQLMSWRKLRGAWFPLFAILPLLLTLNFLGSAGFDFAAAR
GLGGLNEPDLASALAQQPGRYNVFTFLSLWIAIGFGTVGLIVGFWFGRSRSMDDA