Protein Info for GFF2062 in Sphingobium sp. HT1-2

Annotation: Proton/glutamate symporter @ Sodium/glutamate symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 50 to 75 (26 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 161 to 182 (22 residues), see Phobius details amino acids 192 to 228 (37 residues), see Phobius details amino acids 237 to 259 (23 residues), see Phobius details amino acids 321 to 340 (20 residues), see Phobius details amino acids 345 to 372 (28 residues), see Phobius details PF00375: SDF" amino acids 10 to 414 (405 residues), 322.2 bits, see alignment E=2.4e-100

Best Hits

KEGG orthology group: None (inferred from 87% identity to sjp:SJA_C1-14570)

Predicted SEED Role

"Proton/glutamate symport protein @ Sodium/glutamate symport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>GFF2062 Proton/glutamate symporter @ Sodium/glutamate symporter (Sphingobium sp. HT1-2)
MALNYRSFGFQVLLGMVVGLALGLVARQIGAGPDGDLNWLATTLKTVGSIFVSLLKAIVP
PLVFAAIVASIANLRALDNAARLAGQTLLWFAITALIAVSIGLAIGLIVQPGAGLHGTAL
AMGKADSVGGWLDFLKGLVPGNSLALSAGTKITDGSASTSISFNILQLLVISIAVGLATL
KVGDKAEPFLSFVRSLLAVVRAILGWVIRLTPIGSAALIGTAIATYGWSALAQLGTFTAA
IYLGLGLVLLVVYPLLLIANGLKPGPFFAKAWPAIQLAFVSRSSVGTLPVTETVTERLGV
DKGYAAFAIPLASTTKMDGCASIYPALAAIFVAGFYGIPLHFIDYVLIVFVSVIGSAATA
GLTGAIVMLTLTLSTLGLPLEGAGLLLAIDPILDMGRTAVNVAGQVLVGVIVAKREGILD
ESAYYGEGELVAA