Protein Info for GFF2054 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: putative membrane carboxypeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details PF00912: Transgly" amino acids 82 to 159 (78 residues), 29.4 bits, see alignment E=2.7e-11

Best Hits

Swiss-Prot: 100% identical to YFEL_SALTY: Uncharacterized protein YfeL (yfeL) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 98% identity to see:SNSL254_A2633)

Predicted SEED Role

"putative membrane carboxypeptidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (179 amino acids)

>GFF2054 putative membrane carboxypeptidase (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MPGVLLWFFKGVIALLLAFAVGLIVYYYLEIRPIAQTALQSASFWLSESPQTRFLRRAAA
KIHPKSYTARLLYTQAGVDGHFRIAIWVFWLDSLYRDDELYAMMLAQAYYGRDSQGNAVY
GTKNAALTLFHVPVTEMACQQQVQLIYMFKAPSLYRPGSARLVESSKHYMTLCQEQIQQ