Protein Info for PS417_10455 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 86 to 103 (18 residues), see Phobius details amino acids 125 to 148 (24 residues), see Phobius details amino acids 160 to 179 (20 residues), see Phobius details amino acids 191 to 213 (23 residues), see Phobius details amino acids 220 to 237 (18 residues), see Phobius details PF03741: TerC" amino acids 19 to 210 (192 residues), 163.1 bits, see alignment E=2.9e-52

Best Hits

Swiss-Prot: 46% identical to Y056_HAEIN: UPF0053 protein HI_0056 (HI_0056) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 96% identity to pfs:PFLU2143)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TY98 at UniProt or InterPro

Protein Sequence (250 amino acids)

>PS417_10455 membrane protein (Pseudomonas simiae WCS417)
MDYLLQLAASPTAWVALATLIVMEIVLGIDNLIFISILTNKLPEQHRAKARRIGISMALV
LRLGLLSTIAFIVQLTAPVFEVFGQAFSWKDMILIAGGLFLVWKATTEIHHSMDPEPEEK
ETSAGNVVAIGFAAAIGQILLLDLVFSIDSIITAVGMTEHLPIMIIAVVTSVIVMLVAAE
PLAKFINDNPTVVMLALGFLIMIGMTLIAEGFGAHVPKGYVYAAMAFSAAIECLNIARRN
RHKRLLAARQ