Protein Info for GFF2048 in Xanthobacter sp. DMC5

Annotation: RecBCD enzyme subunit RecB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1172 TIGR02784: double-strand break repair helicase AddA" amino acids 17 to 1144 (1128 residues), 1164.6 bits, see alignment E=0 PF00580: UvrD-helicase" amino acids 20 to 469 (450 residues), 150.8 bits, see alignment E=1.6e-47 PF13245: AAA_19" amino acids 27 to 454 (428 residues), 37.8 bits, see alignment E=5.3e-13 PF13361: UvrD_C" amino acids 741 to 873 (133 residues), 55.1 bits, see alignment E=2.3e-18 PF12705: PDDEXK_1" amino acids 982 to 1136 (155 residues), 40.4 bits, see alignment E=8.5e-14

Best Hits

KEGG orthology group: None (inferred from 77% identity to xau:Xaut_3300)

Predicted SEED Role

"FIG061771: ATP-dependent nuclease subunit A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1172 amino acids)

>GFF2048 RecBCD enzyme subunit RecB (Xanthobacter sp. DMC5)
MSSPDLARDPKSEATRRQSEASHPAVSAWVSANAGSGKTHVLARRVIRLLLAGTPPGRIL
CLTYTKAAAANMANRVLAILGRWARMDDAVLDAAIAETVGEAPDDALRARARRLFAAALE
TPGGLKIQTIHAFCGGLLHRFPFEADVAAGFRELDEVARRELMARIRADLVVAASLAPAS
PAGEALARLTEEMSDSGLTGLIEAAVALRTRISPLGDTPAARRAAVARALGLPAGLTVTD
VEAEMLASPHLPRSEWESVAATLATSDKATDRKRADDLAAAAAAGDDASALAAYRGVFFG
SDGPRSDKNLLTKGMGTREPDLLARFTAERDRLAGLDDRLKAAWTLERTGAALTLGAEAC
RRYEAEKAARGLLDFDDLITKAAALLAEQPTFVQFKLDQGIDHILVDEAQDTSPEQWKVV
EGLTSDFFSGEGARAGVTRTIFVVGDEKQSIFSFQGADPRAFGAMRSTFERKVGAEGFRR
VELPHSFRSAPGVLEAVDAIFKSEVAHAGLTLDGVGPVHAAIRADAPALVEIWPTTVPEP
HPEPDNWRRPLDEVPSDDPVSRLAARIAGFIQAGIANGLAIPSRNGRPMRAGDVLVLVRR
RGRVFEAVIRALKELKDPRVQVAGADRLVVPEHIAALDLMALGDALLSPHDDLSLASVLK
SPLFGFTDDDLMALCPQRKGTLASVLATSDDTRHRAAAARLAGWKGEAEGLRPFDFYGRV
LGRDGGRRAMLARLGPEAADVLDEFMALARTYEGAEPASLAGFLAFLRRGGAETKRDMES
GRDEVRVMTAHGAKGLEAPLVILADTVDMPRPRIAGGLLTLPGEGVPVLAPRKAEDPEVL
AAARATAAARELEEYRRLFYVALTRAEDALVICGAETRAPARDKPHARPEGCWYDLARAA
LEPDADEGEPLGFEGKVLRWRKGPGLKVAETGAPVPAAVEEAEALSFPNPPPPEPALRRL
RPSGIDGADPRPERPAMPAPLPESALSPLVRGDLVHRLLAGLPEVAAAEREAAGLRLLRH
AADGVDEAAHRAILAEALGVLGHAPLAELFGVGSRAEVPVIGRIAGGGGEVFAVNGRIDR
LVVLPDRILVADFKTDRTPPTDPAEAGESYVSQLAVYGAILSQAFGGRPVEARLVYTAGP
LVVPLAASRLGAALDRLGVPSPPFASLGVKGA