Protein Info for GFF2042 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1071 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF03797: Autotransporter" amino acids 807 to 1032 (226 residues), 79.3 bits, see alignment E=2.1e-26

Best Hits

KEGG orthology group: None (inferred from 68% identity to sjp:SJA_C1-22030)

Predicted SEED Role

"FIG01094381: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1071 amino acids)

>GFF2042 hypothetical protein (Sphingobium sp. HT1-2)
MRHLLACTAIAPVLVALTATNAAAETTIGSSTTTAVKTSTVASGAADAITVSSAGSITLT
SGTAITMDSNNNVSNAGSLTINDADNATGILVKAGTTGNITNSGTITLTEDYTATDTDSD
GDIDGTFAKGTNRNGMLVESGAAHTGNIDTTGTISIEGNNSAGIRVNSTLIGNLSTYGTI
SVVGDNSYGVVANDIDGNATIRGSISTKGANSTAVALLGDVDGAVKIQGTIVSTGYRSTT
RPSDVTKLDADDLLQGGPALVIAGNVSGGIVFDVAPTASDDDDEDDTDIDDDGLLDSTET
TATVINYGSAAAVQVGSATADTSIGVVQGDSSGYGVVVRGAIAGYGIYDGVDANAMVIGG
LGGDVDIAKGVLVAGSITAISYDSNATALRLGSGATSDAIEISGTVAASGAALANTSARG
LVIDAGAQVNSVKVSGTVAAVAADDEKGRAIAILDSSGTVSSLSNTGTISATGGLTNTAI
DLSANSSGVTLTQALASSTATAPSIVGEVKLGSGDDVMTVSAGRIVGDVALGAGNNSLSL
SGSSTLTGDLSYAGTGATLTLADTASVTGALDFGGASGTMTLNGTSSYTGAISNSGNMAL
VLNGGTLAASNTGSIALASLSASSGSALGVTINGADGTNTVYDVAGAASFASGSKVKVAL
TQVGGSEGDYVIVRAASLSGTPALDSATLLPYMFKGSVSSDTTTGDVTLSIAAKTTSELG
LTGSLSRAYSAIFNALDNDSTLANAYLDVTDGQTLNGALRQMLPEHSGSTFEAVTAGSRA
TARILSDPNGIYRTKDGKLGFWLQQVAFGSSKSIGDTASYDINGWGAGGGVEYLTDLGAF
GGSFAYIHGRDTSDSSNSSADSDQFELAAHWHGSWGPLQAFARVSAAHIDFDGTRNFTLD
DVVRKATGDWSGKLYSATAWASYQLQFNRFSLRPGVGIDYYRLKEGGYSESGGGDAFNLT
VDGRTSDEMTANGTIAAGYDFGSLNREDGWARFELEGGRRQLIGGSLGDTVAHFKDGDDF
VLVADKRTSGWTGRARLYGGTDTFRVGGEFGAEEQQNHVAISFRATVNFVL