Protein Info for GFF2038 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 223 to 245 (23 residues), see Phobius details PF00126: HTH_1" amino acids 16 to 69 (54 residues), 67.5 bits, see alignment 8.2e-23 PF03466: LysR_substrate" amino acids 98 to 290 (193 residues), 62.4 bits, see alignment E=4.2e-21

Best Hits

KEGG orthology group: None (inferred from 69% identity to ara:Arad_7056)

Predicted SEED Role

"Glycine cleavage system transcriptional activator" in subsystem Orphan regulatory proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (323 amino acids)

>GFF2038 hypothetical protein (Xanthobacter sp. DMC5)
MRKIRLALPSMNGFFTFEAAARCGSFARAAGELNVTPAAVSRMIGRLEDHIGTALFNRLP
GGVTLTEPGLILYEAISRGFSGIEHALREIEDRNAGVDTVTLSVSTGFTTHWIMPRMAEL
KRTFPTVELRFELIMSALTGPVTDVDLGMRFVNGPDERHEAAYIMPETLLPICSPGYSEA
HRGPMKSTEETLIFLSEAQPDWSHLFFPETSQSAINSMIFSDYAIVVQAALLGQGVALGW
LNVICHWLRNKMLIPASPRLMTTGRHCQFVRSRDKATRPIVTEVRDWIIARIQEDIAVVA
DLHPQLGLDEVLEQGARQVTSRS