Protein Info for GFF2035 in Xanthobacter sp. DMC5

Annotation: Gamma-glutamylputrescine oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 PF01266: DAO" amino acids 34 to 390 (357 residues), 229.7 bits, see alignment E=1.6e-71 PF13450: NAD_binding_8" amino acids 37 to 80 (44 residues), 24.8 bits, see alignment 4.3e-09

Best Hits

KEGG orthology group: None (inferred from 72% identity to rlt:Rleg2_4992)

Predicted SEED Role

"Opine oxidase subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (434 amino acids)

>GFF2035 Gamma-glutamylputrescine oxidoreductase (Xanthobacter sp. DMC5)
MVTPALPTDIPSLWQATSVACPTFASASGDQSFDVAVIGGGYTGLTTAHYLSKAGLSPVV
LEANGIGWGASGRNGGVVSGKFRLGFRDIASRHGIETARRMHDLGLEAIAHVGEIIAELG
IEGADYQPTGSLRCAHNAHTLEQLKTEAEWLRSALADTAIAILSAEEVAAETGSHGFTGG
MLNTHGGVIHPLNYVLGLAAGLKAAGIAIHERSPVLSLRREGTGVVIETLAARITARQVV
IATNSYSDLTPVTAAVRTSIIPFRSAMIATEPLTGTPGAHLLRTGRSYTETRRMMRWFRK
AGDRLLYGGRGAFGKTDRESAFTALEKAMVRQFPELAQVKVTHRWSGLVAMTLDSLPHLG
RLDDRVVYSVGYNGTGVALASGIGRHVADLVTGRQPDLGLITRQPLHPIPFYALREPAVR
LVAGAYQFLDAIGR