Protein Info for GFF2013 in Sphingobium sp. HT1-2

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 92 PF01527: HTH_Tnp_1" amino acids 7 to 74 (68 residues), 60.1 bits, see alignment E=3e-20 PF13384: HTH_23" amino acids 22 to 51 (30 residues), 29.5 bits, see alignment E=7.4e-11 PF13518: HTH_28" amino acids 23 to 50 (28 residues), 25.1 bits, see alignment E=2.3e-09

Best Hits

Swiss-Prot: 39% identical to YI74_BURM1: Insertion element IS407 uncharacterized 10.0 kDa protein (Bmul_4720) from Burkholderia multivorans (strain ATCC 17616 / 249)

KEGG orthology group: None (inferred from 95% identity to swi:Swit_4909)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (92 amino acids)

>GFF2013 Mobile element protein (Sphingobium sp. HT1-2)
MPSKKHKPEEIIGKLREAEIVLAQGASTAEACRRIAVSEQTYYRWRKEYGGLKTDQARRM
KDLEKENQRLRRAISDLTLDKLILQEAAKGNF