Protein Info for PS417_10150 in Pseudomonas simiae WCS417

Annotation: tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1028 transmembrane" amino acids 210 to 234 (25 residues), see Phobius details PF06791: TMP_2" amino acids 204 to 351 (148 residues), 138.5 bits, see alignment E=2.6e-44 TIGR01541: phage tail tape measure protein, lambda family" amino acids 652 to 979 (328 residues), 160.3 bits, see alignment E=3.2e-51 PF09718: Tape_meas_lam_C" amino acids 775 to 849 (75 residues), 100.1 bits, see alignment 5.8e-33

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TY49 at UniProt or InterPro

Protein Sequence (1028 amino acids)

>PS417_10150 tail protein (Pseudomonas simiae WCS417)
MNIAELGVKIDSADAIQAKTSLDEMAKAGGRAEQSAVSLMNEMQALEKSLSTSAKTTQDL
AKQRDALAKLTKTGAYGEAEAAKISAQLDKQQVALAKSAMDEQKALNSLLGAIDPARAAL
AKLDNQVEQLGKHLDAGRISQDQYNTALSKIDKDYAKLEKTTTGFDKLRLGTRQAQENVV
QLGNALSSGDWGSGVRAVAQLGAGAGAGAAGLLAILGPMALATAAVGGLAVGYYKGSEEQ
DKFRESLVTTGNAAGTTSSSLAAMAKQVSTTIGTTGSAAAVLAQLAGSGKIVSGSFEQIA
IAALSFEKATGKAASETVQEFTKLADDPVKSVVALNDKYNFLTAAVYTQIRALQEQGDTL
GAQQVAEGAYADALIERAGTIIGNLGTVESAWNAVKGAAKGAWDAVLDIGREDTFDEKFE
KLADRLNTLRNAKSNPMILGDNPDMMMLSGGEAGAQSDITSLLQKEVDDQAKVRREMFQA
QDIREGTKAYETLQSNLDATASKSTKLTKALEENQRRIASARQAGYTFTAAEEAALEKQT
RDKFKDSKTVGTQVDLTSFNNAKNDLAAITDTYKNYQKELEAAQKAGLLSEEDYLLRRQA
LIGNQLDQTTAAYKAEIAALEAAKGKKTTSAAQSIQLDQKIADARTGMVKAQKDADSQLE
VLATNETGRLAKQERAISTYVQALGQQQRALELAGQRAVIGVGLGDRQNALSGELNSQQD
RFAQQSLELANQKSDPSRNMSEEEFKRKSQALADANKAATDQIRQNYADVENAQGDWTKG
ATAAWDNYLDSARNIAGQTKSLFGNAFSSMEDSIVNFAMTGKASFSDFAKSILADMARIA
TRQASSALLGSLVGAAASYLGGSAAGGGNGMAAGSAGAASSNLGASSAGYSSTYFPQAKG
GAWSGGVQLFADGGAFTNSIVSKPTAFGMANGKTGVMGEAGEEAIMPLTRTSSGKLGVMA
MGGGGAGGTQINVEVHIDGDGNASSAVDAPGYDVFGKELATFVEQKYQELRSKDMRQGGV
INKAIKGR