Protein Info for PS417_10080 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 PF13264: DUF4055" amino acids 245 to 384 (140 residues), 113.7 bits, see alignment E=4e-37

Best Hits

KEGG orthology group: None (inferred from 79% identity to psb:Psyr_2793)

Predicted SEED Role

"62kDa structural protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U244 at UniProt or InterPro

Protein Sequence (472 amino acids)

>PS417_10080 hypothetical protein (Pseudomonas simiae WCS417)
MSNDVSFKRAEYTAVLDRWATVRDVCAGQHRVVDRLPYINAHDKSPENEDRNRAYRERAV
FKNATGHTRNGLLGLAFHKDPTLTVPKKLEYLQDNANGSGVSIYQHSQGTLEKVLEAGRH
GLYVDYHQDDGIGGHSVILSYCAEDIINWRTGMVNGHSVLTLVVLRESPEIPDGFGYKMA
EQYRELALEDDGFVCRVWRRSGPKGGGPLAVIEEFKPEGVTGRLKEIPFTFVGAQNNDPS
IDESPLYDIAMINLGHYRNSADYEDSVFWCGQAQPWISGLDEQWRDWMEKNGVYVGSRAP
MMLPSGGQFGYAQPQPNTLVKEAMADKNQMMIELGARMVVASLSSKTATEARGDQSASTS
VLAGCVANVSEAYTRAIMWCCAYMGIADKKVAYQVNQEFVELTADPQMITALVGLWQNGG
FAKADLRAYLRKLGLIAPERTDLQIDGELQEQGDGLGLDDEDTPNGGKPSNP