Protein Info for PS417_10075 in Pseudomonas simiae WCS417

Annotation: terminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 PF03237: Terminase_6N" amino acids 21 to 233 (213 residues), 97.1 bits, see alignment E=1.2e-31 PF17289: Terminase_6C" amino acids 253 to 416 (164 residues), 25.3 bits, see alignment E=1.3e-09

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfl:PFL_3766)

Predicted SEED Role

"Putative phage terminase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UA26 at UniProt or InterPro

Protein Sequence (433 amino acids)

>PS417_10075 terminase (Pseudomonas simiae WCS417)
MPSLNVPQAQFLTLPHKFRAFVAGFGSGKTWVGCSALSKHFMEWPSVNAGYFAPTYPQIR
DIFYPTMDEVAYDWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKIGHALV
DELDVLTAVKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQLRDKPSLK
EMYGLVQASTFDNELNLPGDYIASLMESYPPQLIMAYLKGQFVNLTSGTIYTAYDRKLNG
CFDTVQPGEPLFIGMDFNVGKMAAITHVKRDQGLPRAVDELIDGYDTPDMIRRIKERYWQ
HDGNDFKKSCEIRIYPDASGDSRKSVNASITDLAMLKQAGFAVIAPAANPPVKDRINAMN
AVFCNAQGERRYLVNPFTCPTYADGLEQQVWGANGEPDKTAGIDHANDAGGYFIHREYPI
IKPVTAIKMGYAR