Protein Info for GFF1957 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 39 to 56 (18 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 132 (19 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details PF09822: ABC_transp_aux" amino acids 142 to 258 (117 residues), 39.8 bits, see alignment E=3.3e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>GFF1957 hypothetical protein (Sphingobium sp. HT1-2)
MMSLVRFLSRLLTLLLPATLMLFAGLAAAWRTGQADPWCWGWPALLLLVPTGWWLARQDF
LHALWVGLGGAGMALLFCALAAARMPDPWAMIGLLLLALAAASGGALLWQRRWLPACVAL
VVALLLLGVGPARPISSQPDRPVLAVITALPLFWEEGGAGTRRDAPIVTLLRSWFDVRPI
DDVRALAASSAPVLLLAQPRPMTPQALVALDRWVRNGGRLLLLTDPRLRWPSDLPLGDRR
RAPMVGTLGPLLAHWGVQGGAVRDLEMRHFLPDGRLLTVAGMQSLSLAGQEGAVPLRLRI
GRGEVLLLGDADLIDDRLWLADPARPLDPRAWSADTPALVAQWLGAEMPDGRRWMRDVAD
VRLGLRSALLAGTGWAILGLMLLRRRSGRNGMRTKSENKLVKGVKNG