Protein Info for GFF1933 in Variovorax sp. SCN45

Annotation: Alkaline phosphatase (EC 3.1.3.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 3866 PF00353: HemolysinCabind" amino acids 573 to 607 (35 residues), 22 bits, see alignment (E = 3.8e-08) amino acids 668 to 702 (35 residues), 28.1 bits, see alignment (E = 4.7e-10) amino acids 694 to 728 (35 residues), 24.1 bits, see alignment (E = 8.3e-09) amino acids 729 to 754 (26 residues), 22.6 bits, see alignment (E = 2.5e-08) amino acids 1486 to 1515 (30 residues), 25.8 bits, see alignment (E = 2.5e-09) amino acids 1498 to 1533 (36 residues), 35.1 bits, see alignment (E = 3e-12) amino acids 1517 to 1542 (26 residues), 14.3 bits, see alignment (E = 1e-05) amino acids 1650 to 1680 (31 residues), 26.3 bits, see alignment (E = 1.8e-09) amino acids 1686 to 1718 (33 residues), 28.3 bits, see alignment (E = 4e-10) amino acids 1693 to 1728 (36 residues), 27.6 bits, see alignment (E = 7.1e-10) amino acids 1876 to 1909 (34 residues), 16.4 bits, see alignment (E = 2.2e-06) amino acids 1956 to 1990 (35 residues), 33 bits, see alignment (E = 1.4e-11) amino acids 2037 to 2071 (35 residues), 33.2 bits, see alignment (E = 1.2e-11) amino acids 2046 to 2080 (35 residues), 27.8 bits, see alignment (E = 5.9e-10) amino acids 2064 to 2080 (17 residues), 10.1 bits, see alignment (E = 0.0002) amino acids 2129 to 2164 (36 residues), 27.1 bits, see alignment (E = 9.7e-10) amino acids 2138 to 2172 (35 residues), 24.4 bits, see alignment (E = 6.8e-09) amino acids 2222 to 2256 (35 residues), 25.2 bits, see alignment (E = 4e-09) amino acids 2301 to 2334 (34 residues), 24 bits, see alignment (E = 9.1e-09) amino acids 2336 to 2371 (36 residues), 34.9 bits, see alignment (E = 3.5e-12) amino acids 2378 to 2392 (15 residues), 10.7 bits, see alignment (E = 0.00013) amino acids 2394 to 2436 (43 residues), 10.3 bits, see alignment (E = 0.00018) amino acids 2413 to 2443 (31 residues), 17.7 bits, see alignment (E = 8.7e-07) amino acids 2428 to 2462 (35 residues), 17.5 bits, see alignment (E = 9.7e-07) amino acids 2669 to 2702 (34 residues), 29.3 bits, see alignment (E = 2e-10) amino acids 2796 to 2829 (34 residues), 25.2 bits, see alignment (E = 3.8e-09) amino acids 2815 to 2847 (33 residues), 30.5 bits, see alignment (E = 8.4e-11) amino acids 2824 to 2856 (33 residues), 28.8 bits, see alignment (E = 2.9e-10) amino acids 2848 to 2882 (35 residues), 32 bits, see alignment (E = 2.9e-11) amino acids 2977 to 3010 (34 residues), 17.1 bits, see alignment (E = 1.4e-06) amino acids 3012 to 3045 (34 residues), 32.5 bits, see alignment (E = 2e-11) amino acids 3139 to 3172 (34 residues), 16.7 bits, see alignment (E = 1.8e-06) amino acids 3164 to 3199 (36 residues), 26.1 bits, see alignment (E = 2e-09) amino acids 3200 to 3233 (34 residues), 17.5 bits, see alignment (E = 1e-06) amino acids 3329 to 3362 (34 residues), 29.9 bits, see alignment (E = 1.3e-10) amino acids 3355 to 3386 (32 residues), 15.5 bits, see alignment (E = 4.2e-06) amino acids 3482 to 3515 (34 residues), 28.1 bits, see alignment (E = 4.7e-10) amino acids 3517 to 3551 (35 residues), 32.8 bits, see alignment (E = 1.6e-11) amino acids 3675 to 3709 (35 residues), 41.1 bits, see alignment (E = 4.2e-14) amino acids 3710 to 3742 (33 residues), 24.8 bits, see alignment (E = 5.3e-09) PF17892: Cadherin_5" amino acids 830 to 907 (78 residues), 44 bits, see alignment (E = 4.9e-15) PF17963: Big_9" amino acids 844 to 910 (67 residues), 39.4 bits, see alignment (E = 2.8e-13) PF00082: Peptidase_S8" amino acids 977 to 1255 (279 residues), 98.5 bits, see alignment 1.4e-31 PF01483: P_proprotein" amino acids 1315 to 1410 (96 residues), 72.3 bits, see alignment (E = 8.7e-24) PF06594: HCBP_related" amino acids 2746 to 2784 (39 residues), 57.5 bits, see alignment (E = 3.1e-19) amino acids 2926 to 2965 (40 residues), 46.6 bits, see alignment (E = 7.8e-16) amino acids 3088 to 3128 (41 residues), 22.5 bits, see alignment (E = 2.6e-08) amino acids 3275 to 3320 (46 residues), 35.4 bits, see alignment (E = 2.5e-12) amino acids 3429 to 3473 (45 residues), 45.1 bits, see alignment (E = 2.3e-15) amino acids 3612 to 3656 (45 residues), 26.2 bits, see alignment (E = 1.9e-09) amino acids 3779 to 3825 (47 residues), 22.6 bits, see alignment (E = 2.6e-08)

Best Hits

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (3866 amino acids)

>GFF1933 Alkaline phosphatase (EC 3.1.3.1) (Variovorax sp. SCN45)
MSSDSTFAEFARLDSIANGMGLSGADKTAYVIEQARRVVSAYGNHVYRNSASEHVIDTLR
LKDTPEGAAYDIHVKATFNVVGYVVTDVAMYDDNSSSASIVYENGERRDVTFDSFGDIYQ
ERIKSESGASTTTRYDVPSLHGTRTVVVQDGDDKVLSSRTTQTFDDGSTITRNVDLIEHT
LTESVTTTDGTIHSELKTVFGQAGNSTEANAFNFTTANTLAAAQEAALDPNAQIAQVTQG
QVASGGSWNLTYNADDLNNNQLVGGSVDNTSAAAITQILADGWRPGNGNTVAPVIDPNGN
LLGSGLYNPDPWLIGSWLNTANSLAQFTLPTDPLVLDLDGDGVRLTQYGTAPVLFDADND
GGSLEQTGWVSATDGIVAVDRNGNGKIDNISETLSEYFGGAAGTGGNAGEKRFKDGFAAL
KSMDSNNDNLFTSADAAWGSVKVWVDGNHDGKSWNDANRNGVVDSGEASELKTLAELGIT
QVNLTNTAQSGEVRDGNEVLARGTFVQNGKIKEAIAANFLANPNGSTSSTSGTGTVINTQ
AGTNAAATSSYVAGNDAGETIDVTSKGVRNAAGGDGRDVLTGDANNNWLAGGLGSDTFNA
GAGDDILLIDAYDLQQNIRGGAGTDIVQVVGNRGVTLNLSQAEVEVAQGGRGSDIFVAGG
RRSVFMRGGDGHDVLIGSSAADALSGEDGDDLIDGGAGNDVLRGHRGEDNISGGAGDDLL
DGGLGDDGLFGGLGNDVLKGGAGDDTIDGGDGTDAVELQGNYSEYRILKTDDGVWISDTV
AGRDGTDFVKNVERANFADVNRVEIPSNTSVGLENPLPVKDVLSKDKNGTNFDRTNPHLI
GKGQLLANDIDWQGDALQISQLFDVTGGTASITSAGDVLFTPDASFTGFMGFKYTVIDSK
GNVAATVIDINTGQSAGMRAAVYLKTPDMPSDPLVTDQWYLANANILPVWKNYTGKGVRI
GQFEPSGAFGTTKEVLDYRHGDLKDNIDAQWLASSQPGQLAGEGSEGKLSGHATLVAGVM
VGSRNGIGGVGVAYGATVAGHWLSAQDFGTLSKMQQYDVVNHSWGAASNFDVKFTPAKIG
SLPVAYENAIALGRQGLGTVIVTAGGNDRAKGGNTNYSSVSNTRSSIIVGAINAKTDLGL
LQIGGKPFSSPGASILVSAPGSNVSSTSRLVQTSNGSTFGANETVAQGTSFATPIVSGIV
ALMLEANPTLGYRDVQQILTISARKVDDASTTWQTNGSKTWNGGGMHASHDYGYGEVDAR
AAIRLAETWTNQQAYGNENNLLQPVASGALNLAIADGSLNGTSHTLTVNDSPIRVEHVEI
RLNITHARPGDLIVKLISPSGTESILMNRPGKAPGSTASDRGDTSFNGSSTLDYVFDTAL
LRGESANGNWTLKVIDTTTGDVGTLNNWSMDVFGAVPATGDDHYVYTNEFAQLAATAGRN
VLNDTNSGQDTINAAAISSATRIDLNTGTATLAGAKLTIQTPGSIENLIGGEFNDTLTGN
AASNTLIGGRGNDTLSGGDGTDAMFGGLGNDTLTGGNEADWFVIEKDAGATDVVTDFVAG
VDKIVVSGFAVDVWSALQLTQQGADTKIDFGNGQTVLLKGVLPSNLGATSFLTVPEGFTA
REFLTANRPAIGSDGNEINVVLPNDDITLWGGAGDDSIYGGTRNDLLHGGAGNDTLVGDT
TTDGADGGNDILDGGAGDDVLRGGAGNDQLIGGTGLDLVNGDAGNDVILMQGDEALDKHA
QAATQLLGNATLTGNALVFAQVIGSTGSDRFILKEDLSAGASVGLLRNLVADFNVADGAE
KIDLSLIRAVRTFSELSFSTVTYNSEQYLRVWLGQPAAGTQYLTFKGVTAAQLSAANFIF
SNADTLPALSKAFISGTGADDVLVGDAGGNTLDGVAGADTMEGRTGDDTYVVDNAGDIVR
EVAGGGYDVVKSSVSYVLGDEVEDLTLTGAAAINGTGNANANRLTGNAGNNVLDGGAGTD
VMRGGAGNDTYIVDDVSDTIVELDNEGTDSVKASVSYTLAAGLENLTLTGTQDAGGTGND
LNNQLIGNAGNNHLFGWAGNDVLDGQLGNDVMVGGSGDDTYVVDSRYDTVIERTNEGSDT
VVSSVDFTILDKPNLEHITLAGTQAVKATGNAGNNRLTGNGADNLIDAGAGNDYLDGGSG
VDTMIGGSGNDSYIVDNVGDVVTELANGGTDTVNSSVTYTLADKIEVENLNMTGSSDILG
LGNSANNIISGNSGRNLLIGDSGADLIAGGAGDDILVGAGTGFEYESVNYSFMDRVMLVF
TGGYPGLLSDGTYGFAVDALGGYGKNTLYGGDGNDQLYAGDDGDTLNGDAGDDKVYGGAG
KDSLFGQSGNDYLDGGSGDDRLFGGDGADQLNAGRGVGADFLDGGAGDDVLTAHGFEAND
ILLGGAGSDRLTSGSGFLDGGDGNDKLTGGLGVDILVGGAGIDSLDGGDGNDIIMLDGDD
GFVDISSSATSPPVPPPSLSPYELSIWQVTQTMAPTSWRGAPGAGVRIGGTGADTFLMTP
TGGGSKFAGYASGSFAMANLIYDFDVAADKIDLSQVDWLTDFSQFKTIIFDQTSGLSDGI
NFTKVFAEAEGQSIFIGFYNLPPKALSASNFIFKGAANATPLTFVPDGIGIANGVRWDVT
NFKTVAVTSASQGADSLYGDNAQADAMNGLGGNDELFGQGGDDTLDGGAGNDRLDGGKGN
DSYLAYRGMGQDEISDYDSSQGNVDTVKFGAGILASEVKVSRDVDHLYLSINGSTDRVTL
KNWFKGTGYQIERVQFADGTIWSAGVLATVANGTATELSDTLYGTDASDLINGLGGDDVI
YGAAGADSINGGAGRDTLDGGVGNDTLIGGMDNDTLRGGAGDDVLDGGLGNDRLEGGLGS
DVYVMSRGMGGDVANDRGEANGELDVVKMAADLNPTDIQVTRSSRNLILTIKGATDQLTL
ENWFTTFSDAVIDRVQFADGTIWNKGELTVMANGSPTEGADTIYGDERSNALSSLGGNDI
VYGLGGVDVLNGGAGDDQLYGGDGADTLDGGAGNDVLRGEGGDDTYLMYRGMGSDQIEEQ
AGTGIHNVIRVDASVAVEDLVVSRDKTNIYLSIKNTSERFTLRSAWGGDPSALIQRVEFA
DGKSWSSETLQSKLRGISSEGNDSLFGTNAADAINGLGGHDLIDGMDGDDVINAGNGADI
AYGGKGNDVLNGGEGGDQLYGEDGTDTLDGGTGDDQLNGGTGNNVYLFGRGDGQDTITVA
YDSTAGKLNVLQFKLGVLPSDVVIRRLTDVGSESLQLSIAGTSDKVTVREFFSYSEDPAN
FSNPVQLVRFADGTVWNTATLQSLSLIATSSADTINATNRDDTIYGLAGADVLNGRGGND
TIDGGADNDELNGGMGNNVYLFGKGDGQDTIISTYDSTVGKLNVLRFKAGVLPSELIFKR
VPDAGSASLELSIAGTTDKVTVRDFFSYSDDPANVSNPVQRVEFADGTVWNIAALMSRVL
AGTPGADTINGTNASDTIHGQGGADVLDGRSGDDALYGQDGEDVLTGGSGNDTLDGGAGN
DQLDGGVGSNVYLFGRGDGQDTIVFSIRPDPNSFNSLYYGPTGLRVNTLQFKEGVLPSDV
TARYVKGDGYENLELSIKGSIDKIVVRGFFDFLDEKDYFNPVQRIKFADGSTFDVDAIRA
LVFPAPDDSDNDILGSAGADTINGKAGADLIYGRAGADTLIGGEGNDTIYGEAGADELIG
GTGNDILDGGAGNDIYSFNRGDGQDQIFDVDGTAGNVDVLRFGASVSKDQLWFRQSGDDL
EVSIIGTTDKVLVKKFYTKYMVFGNETPNPSHIEQFKTSDGKVLLDSQVQNLVQAMVSFS
PPAVGQTTLPASYQGSLNSVIVANWH