Protein Info for GFF1926 in Sphingobium sp. HT1-2

Annotation: Gluconate transporter family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 31 to 49 (19 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 102 to 120 (19 residues), see Phobius details amino acids 125 to 141 (17 residues), see Phobius details amino acids 149 to 166 (18 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 235 to 258 (24 residues), see Phobius details amino acids 265 to 288 (24 residues), see Phobius details amino acids 300 to 322 (23 residues), see Phobius details amino acids 334 to 356 (23 residues), see Phobius details amino acids 364 to 382 (19 residues), see Phobius details amino acids 388 to 411 (24 residues), see Phobius details amino acids 423 to 447 (25 residues), see Phobius details TIGR00791: transporter, gluconate:H+ symporter (GntP) family" amino acids 9 to 447 (439 residues), 360.5 bits, see alignment E=7.1e-112 PF02447: GntP_permease" amino acids 9 to 445 (437 residues), 378.8 bits, see alignment E=1.7e-117

Best Hits

Predicted SEED Role

"Gluconate transporter family protein" in subsystem D-gluconate and ketogluconates metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (448 amino acids)

>GFF1926 Gluconate transporter family protein (Sphingobium sp. HT1-2)
MTPADYRLLIAAVIGIALSIALIIRGRLHPFVGLLCGAFTVGLIAGLPMEETAKAVEKGA
GTILGGTGLVVALGLGLGAMLQLSDGAGGLARSALRISGVKGAPWASLFTAIVIGLPLFF
ETGLVLLLPIVASAAAALPAGQNGDTAKLKLMLPALSGLSVVHALVPPHPGPLLAVNALG
ANLGLTLLYGLIVGIPTAIIAGPVLARFTAPGVKLNPPLLDPVKVDVATPSVGRALAAVL
LPVVLIAAGQAVALLPASVAPHFHWLGWVSDPVVALLIAVLVALPLLFGRRITDAKIQNA
IWTEAMIPAGGIILAIGAGGALKQVLVTAGLSDLLVRFAAGGAISPILLAWGVSVCIRLA
TGSATVATITTAGVMQGLVAASGVEPEWMVLAIGAGSLFFSHVNDPGFWLVKSYLGTDMP
GTFKTWSIMETVVAVVGLLLVLVASSIF