Protein Info for PS417_09770 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 transmembrane" amino acids 22 to 40 (19 residues), see Phobius details amino acids 52 to 74 (23 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 107 to 131 (25 residues), see Phobius details amino acids 143 to 164 (22 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 203 to 223 (21 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details amino acids 275 to 293 (19 residues), see Phobius details amino acids 300 to 320 (21 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 186 (165 residues), 48.1 bits, see alignment E=4e-17

Best Hits

Swiss-Prot: 54% identical to Y1221_YERPE: Uncharacterized MFS-type transporter YPO1221/y2967/YP_0917 (YPO1221) from Yersinia pestis

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU2102)

Predicted SEED Role

"Membrane protein mosC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UFS9 at UniProt or InterPro

Protein Sequence (383 amino acids)

>PS417_09770 MFS transporter (Pseudomonas simiae WCS417)
MTAIPTSAPVVPGRLEQMSTRIAFFIAGFGIAAWAPLVPYAKARADLSEGTLGLLLLCLG
VGSIIAMPAAGALASRFGCRRVLSAGTIMICLALPTLATVSSIPLLMAGLFLFGAGLGTV
DSTVNLQAVIVERASGKTMMSGFHGLFSLGGIVGAAGVSGLLGLGLSPLQATLVVIVITL
AALLKAAPHLLPYGSESSGPAFAVPHGVVLFIGCLCFVVFLAEGAVLDWSAVFLSAERGL
DEAYAGLGYAAFALTMTAGRLTGDAIVRRLGATRVIVAGGALAAAGTFLATLSPAWEVAL
LGYALVGAGCSNIVPVLYTAVGKQNVMPEHIAVPAITTLGYAGILAGPAVIGFIAHGSSL
ATAFLLIGGLLAAVAVSGKILRV