Protein Info for GFF1909 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 683 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 269 to 292 (24 residues), see Phobius details PF00672: HAMP" amino acids 290 to 337 (48 residues), 27.6 bits, see alignment 3.1e-10 PF07228: SpoIIE" amino acids 481 to 673 (193 residues), 172.5 bits, see alignment E=1e-54

Best Hits

KEGG orthology group: K07315, sigma-B regulation protein RsbU (phosphoserine phosphatase) (inferred from 88% identity to xau:Xaut_2520)

Predicted SEED Role

"Serine phosphatase RsbU, regulator of sigma subunit" in subsystem SigmaB stress responce regulation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (683 amino acids)

>GFF1909 hypothetical protein (Xanthobacter sp. DMC5)
MLLRTRITLIVATGFTVLMLGIWGATVLRDRVAQAREGELAIEGQTVLWREIVAFQTANL
ARILERIDTSSPFRIALSFSDRPGIAAAIREVGIDIDDPATYFEVVAADREVVFSDGTTN
ARYILDAGSLDRALKGEVLSGLRQISGSQVIVITTRTVELPGRGRAVLVLGRDAALGMER
FARGISAATTLITLRGRVVASTDFRLWERAKVSITPRRPTAEQLMLDGRNYNVTSIPVAD
VSGSAVGALVSLEDTTQTVQATAFIRQSAVAGAIGLVLLGVVGLNVFLWYSFRPLESAID
VLQALSRGDTSVTVGHAGNDEIGRIAEAVVALRGNVQALAESRRQRERVRRRQEVVISGE
LQALADAIDPTDREEVLALLAKGEENENDDELKRVARVLHDLSRRIVEQHTRLSSMVVEL
REALITKTKLAGLQQELEIARQVQLAILPKEFPPDARVAVHGQMTPAREVGGDFYDYFMI
DDTTLGFVVADVSGKGVPAALFMAISRTLLRSTALFERSPAGCIRRLNDLLAVENEQMLF
VTVLYGVVDLSSGKVTYVNAGHNLPYRIARSGEVTTVPSTGGMAVAVLEGFVYQQHELHL
APGDTLFLYTDGVTEAFDIDEQPYGEERVEDLLRSGAADWSVAELNERVLAAVHVFERGA
PQADDITCLTLRYFGGHGPRRTR