Protein Info for GFF1905 in Xanthobacter sp. DMC5

Annotation: sugar efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 661 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 142 to 167 (26 residues), see Phobius details amino acids 296 to 315 (20 residues), see Phobius details amino acids 326 to 344 (19 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details amino acids 383 to 406 (24 residues), see Phobius details amino acids 413 to 434 (22 residues), see Phobius details amino acids 461 to 483 (23 residues), see Phobius details amino acids 499 to 519 (21 residues), see Phobius details amino acids 527 to 561 (35 residues), see Phobius details amino acids 614 to 638 (25 residues), see Phobius details PF07690: MFS_1" amino acids 262 to 493 (232 residues), 85.1 bits, see alignment E=2.4e-28 amino acids 467 to 637 (171 residues), 44.3 bits, see alignment E=5.7e-16

Best Hits

KEGG orthology group: None (inferred from 76% identity to xau:Xaut_2524)

Predicted SEED Role

"similar to Arabinose efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (661 amino acids)

>GFF1905 sugar efflux transporter (Xanthobacter sp. DMC5)
MIGLRGGISIAIVIILCSALAVIGWGAEQAAQRTIAPEIVAKANSVGRAAADLVQRAAAV
GVPFDRLVGVNRYFDDLRAANIEFTQISLNAAGGKELARSGEASSGGDAPRVFVPVEDAD
GHRLGDVMIVVDPSVVSQQVGAVLVDVAFIGIVALLVALELVALVVGTRGLESLVAVERR
LKALKRGVLSRQEGGAGAAGDLILPIDRHVETLAERHLALRAEAERRGDGEAIARLDEIE
VRTGLGRVQAAESEAAIAVRPALFLFMLAEELTRPFLPRAAQALGVPAGFGPDMSASLPI
VAFMAVVALCQVPFASLSERLGRRPGFLAGAALAAAGYVVSAISPHYDVFLAARVATAVG
YALVFVSAQGHVVDLSSGAARSAALAVFVRAIMVASLCGPPIGGVIADRLGPGVAFGTSA
GLALVALLVARLTLPAAERHRSVANVGLADLKAAARAPGLMSLLLGCAFPAKFLFAALCF
LLVPLELQREGFSSAAIGRFQMIYPVLMVIGVPFFATLADRFSARAGFVVAGGLVSGIGA
MAVLLHPSVALIVVALVALGWGQAMSIASQSALVADTATSMGAGRAAGVLGLFRLVERSG
NAAGPASAGFLLSTLGFASATGFLGAVAVAGAVLFALSGRRIFVHHSRRPSSAAASEGSS
A