Protein Info for PS417_09640 in Pseudomonas simiae WCS417

Annotation: capsular biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 290 to 311 (22 residues), see Phobius details amino acids 456 to 474 (19 residues), see Phobius details TIGR03025: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase" amino acids 49 to 479 (431 residues), 449.5 bits, see alignment E=1.7e-138 TIGR03023: undecaprenyl-phosphate glucose phosphotransferase" amino acids 50 to 479 (430 residues), 482.3 bits, see alignment E=2.1e-148 PF13727: CoA_binding_3" amino acids 71 to 249 (179 residues), 99 bits, see alignment E=3.4e-32 PF02397: Bac_transf" amino acids 285 to 473 (189 residues), 226.2 bits, see alignment E=2.3e-71

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU2082)

Predicted SEED Role

"Extracellular Matrix protein PslA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UD74 at UniProt or InterPro

Protein Sequence (479 amino acids)

>PS417_09640 capsular biosynthesis protein (Pseudomonas simiae WCS417)
MREKSSVDSLFLTRAGFVEFFVVFVKLIHGLTAILPPLVLVLFLDPIDPELRAHFLGLLV
FFAVLTIILFQALGIYSEELFSNRLRLKTKIKAWTAAFCILLFMYQILQFFPQLTPRNLV
TWYIVSLGLFCLERLVMLRLYRRLMRAGKYLQRTVILGFTDTAVHVADHLQRNGDIRSGL
VGFIDDRTERIPKELSNLPLLGNTRDLEKLIRAEQVNQVMICLPWAAEQRIHGLVNRLRQ
LSVNVVLVPDMAALRYGHSKITDVGGILMFNTSQLPLRGWSPVIKRCEDLLLASLALVAL
SPVMLATAIAIKLDSKGPVLFRQNRYGYNDNEIRVFKFRSMYTDQSDFTAERQTTREDPR
ITRVGRIIRKTSIDELPQLFNVLLGNMSMVGPRPHATATKAAGVPFEVAVSEYSSRHRVK
PGITGWAQINGYRGETDTLFKIQKRVEYDLEYISKWSVWFDLYIVFMTVPAVLSTKEVY